anatomical_relation
spatial
FBql:00005860
http://purl.org/obo/owl/FBql#FBql_00005860
anterior_to
spatial
rostral_to
FBcv:0000039
http://purl.org/obo/owl/FBcv#FBcv_0000039
FBql:00005863
http://purl.org/obo/owl/FBql#FBql_00005863
distal_to
spatial
FBcv:0000040
http://purl.org/obo/owl/FBcv#FBcv_0000040
FBql:00005867
http://purl.org/obo/owl/FBql#FBql_00005867
dorsal_to
spatial
FBcv:0000041
http://purl.org/obo/owl/FBcv#FBcv_0000041
FBql:00005865
http://purl.org/obo/owl/FBql#FBql_00005865
superior_to
posterior_to
spatial
FBcv:0000045
http://purl.org/obo/owl/FBcv#FBcv_0000045
FBql:00005864
http://purl.org/obo/owl/FBql#FBql_00005864
caudal_to
proximal_to
The elbow is proximal to the hand, but distal to the shoulder.
spatial
FBql:00005868
http://purl.org/obo/owl/FBql#FBql_00005868
x proximal_to y iff x is closer to the point of attachment with the body than y.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
FBcv:0000047
http://purl.org/obo/owl/FBcv#FBcv_0000047
surrounds
spatial
FBql:00005861
http://purl.org/obo/owl/FBql#FBql_00005861
FBcv:0000048
http://purl.org/obo/owl/FBcv#FBcv_0000048
ventral_to
spatial
FBcv:0000049
http://purl.org/obo/owl/FBcv#FBcv_0000049
FBql:00005866
http://purl.org/obo/owl/FBql#FBql_00005866
inferior_to
vicinity_of
spatial
FBcv:0000050
http://purl.org/obo/owl/FBcv#FBcv_0000050
FBql:00005862
http://purl.org/obo/owl/FBql#FBql_00005862
approximately_perpendicular_to
spatial
Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
ipsilateral_to
spatial
On the same side as. For example, the left arm is ipsilateral to the left leg.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
FBql:00005850
http://purl.org/obo/owl/FBql#FBql_00005850
contralateral_to
spatial
FBql:00005851
http://purl.org/obo/owl/FBql#FBql_00005851
On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg).
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
deep_to
spatial
Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
superficial_to
spatial
Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
surrounded_by
spatial
left_of
spatial
Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is left_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
right_of
spatial
Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is right_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
opposite_to
opposite_to
spatial
Direcly opposite to. i.e. on the opposite side through the axis.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
in_left_side_of
spatial
X left_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the left portion.
BSPO:PATO_mtg_2009
http://purl.org/obo/owl/BSPO#BSPO_PATO_mtg_2009
in_right_side_of
spatial
X right_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the right portion.
BSPO:PATO_mtg_2009
http://purl.org/obo/owl/BSPO#BSPO_PATO_mtg_2009
in_posterior_side_of
spatial
X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion.
BSPO:PATO_mtg_2009
http://purl.org/obo/owl/BSPO#BSPO_PATO_mtg_2009
in_anterior_side_of
spatial
X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion.
BSPO:PATO_mtg_2009
http://purl.org/obo/owl/BSPO#BSPO_PATO_mtg_2009
immediately_deep_to
spatial
Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
adjacent_to
todo - add to ro/bfo
spatial
finishes_axis
A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes_axis x, and x has_end_point p, then x overlaps p
spatial
follows_axis
spatial
has_axis
spatial
has_end_point
Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point
spatial
A relation between an axis and a part of an organism, in which the part defines the initial point of the axis.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
has_start_point
Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point.
spatial
A relation between an axis and a part of an organism, in which the part defines the initial point of the axis.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
orthogonal_to
spatial
crossing at right angles
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
overlaps
"(forall (x y) (iff (overlaps x y) (exists (z) (and (part_of z x) (part_of z y)))))" CLIF []
spatial
x overlaps y iff they have some part in common.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
passes_through
spatial
Intersects at two points.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
starts_axis
A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts_axis x, and x has_start_point p, then x overlaps p
spatial
surface_of
placeholder. used for relation between anatomical surface and an anatomical side.
spatial
left side
spatial
left
upper side
spatial
upper
lower side
spatial
lower
deep-superficial gradient (obsolete)
was made obsolete because the ID had too many digits
spatial
deep side
spatial
deep
superficial side
spatial
superficial
anatomical surface
to be merged into CARO
spatial
surface
A 2D surface of an anatomical continuant
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
anatomical margin
spatial
edge
margin
fiat region extending a short distance from the boundary of an object inwards
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
right side
spatial
right
parasagittal section
spatial
Sagittal section that divides bilateral body into unequal equal left and right sections.
BSPO:mah
http://purl.org/obo/owl/BSPO#BSPO_mah
midsaggital section
spatial
median plane
Sagittal section that divides bilateral body into equal left and right sections.
BSPO:mah
http://purl.org/obo/owl/BSPO#BSPO_mah
median sagittal plane
midsagittal plane
FMA:74563
http://purl.org/obo/owl/FMA#FMA_74563
anatomical axis
axis directions are defined in terms of axes
spatial
URL:http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
A straight line through space, intersecting an anatomical entity.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
upper/lower axis
spatial
An anatomical axis determined by gravity.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
deep/superficial axis
spatial
anterior/posterior axis
spatial
anteroposterior axis
A-P axis
An axis that bisects an organism from head end to opposite end of body or tail.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
AP axis
craniocaudal axis
rostral/caudal
rostrocaudal axis
cephalocaudal axis
URL:http://en.wikipedia.org/wiki/Anatomical_terms_of_location
http://en.wikipedia.org/wiki/Anatomical_terms_of_location
apical/basal axis
In plants, this is the axis that runs from the shoot to the root.
spatial
longitudinal axis
apical/basal
proximal/distal axis
spatial
from tip of an appendage (distal) to where it joins the body (proximal).
URL:http://en.wikipedia.org/wiki/Anatomical_terms_of_location
http://en.wikipedia.org/wiki/Anatomical_terms_of_location
proximodistal
proximal/distal
dorsal/ventral axis
spatial
dorsoventral axis
An axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
left/right axis
spatial
dextro-sinister axis
left to right axis
An axis that bisects an organism from left to right sides of body, through a sagittal section.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
transverse section
spatial
cross-section
Anatomical section that divides body into anterior and posterior sections.
BSPO:mah
http://purl.org/obo/owl/BSPO#BSPO_mah
FMA:12247
http://purl.org/obo/owl/FMA#FMA_12247
axial plane
axial section
transverse plane
horizontal section
spatial
frontal section
coronal section
Anatomical section that divides bilateral body into dorsal and ventral sections.
BSPO:mah
http://purl.org/obo/owl/BSPO#BSPO_mah
FMA:52810
http://purl.org/obo/owl/FMA#FMA_52810
upper-lower gradient
spatial
deep-superficial gradient
spatial
superior side
spatial
superior
apical-basal gradient
spatial
proximal-distal gradient
spatial
inferior side
spatial
inferior
antero-dorsal region
spatial
anterodorsal region
antero-ventral region
spatial
anteroventral region
postero-lateral region
spatial
posterolateral region
antero-lateral region
spatial
anterolateral region
postero-dorsal region
spatial
posterodorsal region
upper region
spatial
lower region
spatial
deep region
spatial
superficial region
spatial
postero-ventral region
spatial
posteroventral region
anterior-most
spatial
anteriormost
posterior-most
spatial
posteriormost
dorsal-most
spatial
dorsalmost
ventral-most
spatial
ventralmost
upper/lower compartment boundary
spatial
deep/superficial compartment boundary
spatial
antero-medial margin
spatial
anteromedial margin
apical/basal compartment boundary
spatial
proximal/distal compartment boundary
spatial
antero-lateral margin
spatial
anterolateral margin
postero-medial margin
spatial
posteromedial margin
postero-lateral margin
spatial
postero-lateral margin
dorso-medial margin
spatial
dorso-medial margin
ventro-medial margin
spatial
ventromedial margin
antero-medial region
spatial
anteromedial region
anatomical gradient
spatial
A region defined by change in the value of some quantity per unit of distance across some spatial axis.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
FBql:00005254
http://purl.org/obo/owl/FBql#FBql_00005254
anterior-posterior gradient
spatial
FBql:00005256
http://purl.org/obo/owl/FBql#FBql_00005256
FBcv:0000142
http://purl.org/obo/owl/FBcv#FBcv_0000142
dorsal-ventral gradient
spatial
FBql:00005255
http://purl.org/obo/owl/FBql#FBql_00005255
FBcv:0000143
http://purl.org/obo/owl/FBcv#FBcv_0000143
anatomical side
spatial
FBql:00005841
http://purl.org/obo/owl/FBql#FBql_00005841
An anatomical region bounded by a plane perpendicular to an axis through the middle.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
anterior side
spatial
rostral
anterior
FBcv:0000053
http://purl.org/obo/owl/FBcv#FBcv_0000053
FBql:00005848
http://purl.org/obo/owl/FBql#FBql_00005848
posterior side
spatial
posterior
caudal
FBql:00005849
http://purl.org/obo/owl/FBql#FBql_00005849
FBcv:0000065
http://purl.org/obo/owl/FBcv#FBcv_0000065
apical side
spatial
apical
FBql:00005854
http://purl.org/obo/owl/FBql#FBql_00005854
FBcv:0000054
http://purl.org/obo/owl/FBcv#FBcv_0000054
basal side
The part of the organism attached to a substrate. Axis of symmetry.
spatial
FBcv:0000055
http://purl.org/obo/owl/FBcv#FBcv_0000055
basal
FBql:00005855
http://purl.org/obo/owl/FBql#FBql_00005855
central side
central is not an axis direction
spatial
FBql:00015851
http://purl.org/obo/owl/FBql#FBql_00015851
central
FBcv:0000056
http://purl.org/obo/owl/FBcv#FBcv_0000056
contralateral side
inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
spatial
contralateral
On the opposite side
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
FBql:00005851
http://purl.org/obo/owl/FBql#FBql_00005851
FBcv:0000057
http://purl.org/obo/owl/FBcv#FBcv_0000057
proximal side
spatial
FBcv:0000066
http://purl.org/obo/owl/FBcv#FBcv_0000066
FBql:00005852
http://purl.org/obo/owl/FBql#FBql_00005852
proximal
distal side
spatial
distal
FBcv:0000058
http://purl.org/obo/owl/FBcv#FBcv_0000058
FBql:00005853
http://purl.org/obo/owl/FBql#FBql_00005853
dorsal side
rename to 'dorsally located'?
spatial
FBcv:0000059
http://purl.org/obo/owl/FBcv#FBcv_0000059
FBql:00005842
http://purl.org/obo/owl/FBql#FBql_00005842
dorsal
postero-medial region
spatial
posteromedial region
ipsilateral side
inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
spatial
FBql:00005850
http://purl.org/obo/owl/FBql#FBql_00005850
FBcv:0000062
http://purl.org/obo/owl/FBcv#FBcv_0000062
On the same side
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
ipsilateral
lateral side
spatial
FBcv:0000063
http://purl.org/obo/owl/FBcv#FBcv_0000063
FBql:00005844
http://purl.org/obo/owl/FBql#FBql_00005844
lateral
medial side
a point in the centre of the organism (where the left-right axis intersects the midsagittal plane)
spatial
medial
FBql:00005847
http://purl.org/obo/owl/FBql#FBql_00005847
FBcv:0000064
http://purl.org/obo/owl/FBcv#FBcv_0000064
ventral side
spatial
FBcv:0000070
http://purl.org/obo/owl/FBcv#FBcv_0000070
FBql:00005843
http://purl.org/obo/owl/FBql#FBql_00005843
ventral
dorso-medial region
spatial
dorsomedial region
anatomical region
to be merged into CARO
spatial
A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
FBql:00005841
http://purl.org/obo/owl/FBql#FBql_00005841
anterior region
spatial
FBql:00005848
http://purl.org/obo/owl/FBql#FBql_00005848
posterior region
spatial
FBql:00005849
http://purl.org/obo/owl/FBql#FBql_00005849
apical region
spatial
FBql:00005854
http://purl.org/obo/owl/FBql#FBql_00005854
basal region
spatial
FBql:00005855
http://purl.org/obo/owl/FBql#FBql_00005855
central region
spatial
FBql:00015851
http://purl.org/obo/owl/FBql#FBql_00015851
contralateral region
inherited from flybase cv. not clear how this would be used
spatial
FBql:00005851
http://purl.org/obo/owl/FBql#FBql_00005851
proximal region
spatial
FBql:00005852
http://purl.org/obo/owl/FBql#FBql_00005852
distal region
spatial
FBql:00005853
http://purl.org/obo/owl/FBql#FBql_00005853
dorsal region
spatial
FBql:00005842
http://purl.org/obo/owl/FBql#FBql_00005842
dorso-lateral region
spatial
dorsolateral region
FBql:00005845
http://purl.org/obo/owl/FBql#FBql_00005845
ipsilateral region
spatial
FBql:00005850
http://purl.org/obo/owl/FBql#FBql_00005850
lateral region
spatial
FBql:00005844
http://purl.org/obo/owl/FBql#FBql_00005844
medial region
spatial
FBql:00005847
http://purl.org/obo/owl/FBql#FBql_00005847
ventral region
spatial
FBql:00005843
http://purl.org/obo/owl/FBql#FBql_00005843
ventro-lateral region
This is an example of a composition of two axis positions
spatial
ventrolateral region
FBql:00005846
http://purl.org/obo/owl/FBql#FBql_00005846
anatomical compartment
to be merged into CARO
spatial
FBql:00005873
http://purl.org/obo/owl/FBql#FBql_00005873
anterior compartment
spatial
FBql:00005874
http://purl.org/obo/owl/FBql#FBql_00005874
FBcv:0000031
http://purl.org/obo/owl/FBcv#FBcv_0000031
compartment boundary
spatial
FBql:00005878
http://purl.org/obo/owl/FBql#FBql_00005878
FBcv:0000032
http://purl.org/obo/owl/FBcv#FBcv_0000032
dorsal compartment
spatial
FBcv:0000035
http://purl.org/obo/owl/FBcv#FBcv_0000035
FBql:00005876
http://purl.org/obo/owl/FBql#FBql_00005876
posterior compartment
spatial
FBcv:0000036
http://purl.org/obo/owl/FBcv#FBcv_0000036
FBql:00005875
http://purl.org/obo/owl/FBql#FBql_00005875
ventral compartment
spatial
FBcv:0000037
http://purl.org/obo/owl/FBcv#FBcv_0000037
FBql:00005877
http://purl.org/obo/owl/FBql#FBql_00005877
anatomical compartment boundary
to be merged into CARO
spatial
FBql:00005881
http://purl.org/obo/owl/FBql#FBql_00005881
anterior/posterior compartment boundary
spatial
FBql:00005880
http://purl.org/obo/owl/FBql#FBql_00005880
FBcv:0000033
http://purl.org/obo/owl/FBcv#FBcv_0000033
dorsal/ventral compartment boundary
spatial
FBql:00005879
http://purl.org/obo/owl/FBql#FBql_00005879
FBcv:0000034
http://purl.org/obo/owl/FBcv#FBcv_0000034
ventro-medial region
spatial
ventromedial region
anterior surface
spatial
FBql:00005848
http://purl.org/obo/owl/FBql#FBql_00005848
posterior surface
spatial
FBql:00005849
http://purl.org/obo/owl/FBql#FBql_00005849
apical surface
spatial
FBql:00005854
http://purl.org/obo/owl/FBql#FBql_00005854
basal surface
spatial
FBql:00005855
http://purl.org/obo/owl/FBql#FBql_00005855
contralateral surface
spatial
FBql:00005851
http://purl.org/obo/owl/FBql#FBql_00005851
proximal surface
spatial
FBql:00005852
http://purl.org/obo/owl/FBql#FBql_00005852
distal surface
spatial
FBql:00005853
http://purl.org/obo/owl/FBql#FBql_00005853
dorsal surface
spatial
FBql:00005842
http://purl.org/obo/owl/FBql#FBql_00005842
ipsilateral surface
spatial
FBql:00005850
http://purl.org/obo/owl/FBql#FBql_00005850
lateral surface
spatial
FBql:00005844
http://purl.org/obo/owl/FBql#FBql_00005844
medial surface
spatial
FBql:00005847
http://purl.org/obo/owl/FBql#FBql_00005847
ventral surface
spatial
FBql:00005843
http://purl.org/obo/owl/FBql#FBql_00005843
anatomical section
These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical.
spatial
section
anatomical cross-section
plane
A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
FMA:242982
http://purl.org/obo/owl/FMA#FMA_242982
cross-section
sagittal section
spatial
sagittal plane
left/right plane
Anatomical section that divides bilateral body into roughly mirror image left and right sections. Bilaterally symmetric organisms have a single sagittal plane.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
BSPO:mah
http://purl.org/obo/owl/BSPO#BSPO_mah
median plane
FMA:11361
http://purl.org/obo/owl/FMA#FMA_11361
anterior margin
spatial
posterior margin
spatial
apical margin
spatial
basal margin
spatial
proximal margin
spatial
distal margin
spatial
dorsal margin
spatial
dorso-lateral margin
spatial
dorsolateral margin
lateral margin
spatial
medial margin
spatial
ventral margin
spatial
ventro-lateral margin
This is an example of a composition of two axis positions
spatial
ventrolateral margin
antero-dorsal margin
spatial
anterodorsal margin
postero-dorsal margin
spatial
posterodorsal margin
antero-ventral margin
spatial
anteroventral margin
postero-ventral margin
spatial
posteroventral margin
medial axis
Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart.
spatial
ML axis
mediolateral axis
medio-lateral axis
From centre of organism to one or other side.
BSPO:cjm
http://purl.org/obo/owl/BSPO#BSPO_cjm
URL:http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
anatomical entity
spatial
Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.
CARO:MAH
http://purl.org/obo/owl/CARO#CARO_MAH