never in taxon
PMID:17921072
tooth SubClassOf 'never in taxon' value 'Aves'
?X DisjointWith RO_0002162 some ?Y
Chris Mungall
PMID:20973947
x never in taxon T if and only if T is a class, and x does not instantiate the class expression "in taxon some T". Note that this is a shortcut relation, and should be used as a hasValue restriction in OWL.
shorthand
synonym typically used in the context of vertebrate anatomy
has_scope
has_obo_format_version
term replaced by
definition
has_synonym_type
database_cross_reference
has_alternative_id
synonym_type_property
has_exact_synonym
has_related_synonym
imported from
has_narrow_synonym
part of
part_of
has part
has_part
inheres in
inheres_in
inheres_in
is bearer of
bearer of
bearer_of
participates in
participates_in
participates_in
anatomical_relation
BSPO:0000095
FBql:00005860
true
anterior_to
BSPO:0000096
FBcv:0000039
FBql:00005863
rostral_to
distal_to
BSPO:0000097
FBcv:0000040
FBql:00005867
dorsal_to
BSPO:0000098
FBcv:0000041
FBql:00005865
superior_to
posterior_to
BSPO:0000099
FBcv:0000045
FBql:00005864
caudal_to
caudal_to
proximal_to
BSPO:0000100
FBcv:0000047
FBql:00005868
The elbow is proximal to the hand, but distal to the shoulder.
x proximal_to y iff x is closer to the point of attachment with the body than y.
BSPO:cjm
x proximal_to y iff x is closer to the point of attachment with the body than y.
surrounds
BSPO:0000101
FBcv:0000048
FBql:00005861
ventral_to
BSPO:0000102
FBcv:0000049
FBql:00005866
inferior_to
vicinity_of
BSPO:0000103
FBcv:0000050
FBql:00005862
approximately_perpendicular_to
BSPO:0000104
Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole.
BSPO:cjm
Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole.
ipsilateral_to
BSPO:0000105
FBql:00005850
On the same side as. For example, the left arm is ipsilateral to the left leg.
BSPO:cjm
On the same side as. For example, the left arm is ipsilateral to the left leg.
contralateral_to
BSPO:0000106
FBql:00005851
On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg).
BSPO:cjm
On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg).
deep_to
BSPO:0000107
Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
BSPO:cjm
Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
superficial_to
BSPO:0000108
Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
BSPO:cjm
Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.
surrounded_by
BSPO:0000109
left_of
BSPO:0000110
Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is left_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o.
BSPO:cjm
Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is left_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o.
right_of
BSPO:0000111
Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is right_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o.
BSPO:cjm
Closer to the right side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left_of Y <=> every instance x of X is right_of some instance y of Y, and there exists some organism o such that x part_of o and y part_of o.
opposite_to
BSPO:0000113
Direcly opposite to. i.e. on the opposite side through the axis.
opposite_to
BSPO:cjm
Direcly opposite to. i.e. on the opposite side through the axis.
in_left_side_of
BSPO:0000120
X left_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the left portion.
BSPO:PATO_mtg_2009
X left_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the left portion.
in_right_side_of
BSPO:0000121
X right_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the right portion.
BSPO:PATO_mtg_2009
X right_side_of Y <=> if Y is subdivided into two left and right portions, X is part_of the right portion.
in_posterior_side_of
BSPO:0000122
X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion.
BSPO:PATO_mtg_2009
X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion.
in_anterior_side_of
BSPO:0000123
X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion.
BSPO:PATO_mtg_2009
X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion.
immediately_deep_to
BSPO:0001107
Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
BSPO:cjm
Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.
connected to
David Osumi-Sutherland
X connected_to Y if and only if X and Y share a fiat boundary.
has component
For use in recording has_part with a cardinality constraint.
develops from
Chris Mungall
Melissa Haendel
David Osumi-Sutherland
Terry Meehan
This is the transitive form of the develops from relation
x develops from y if and only if either (a) x directly develops from y or (b) there exists some z such that x directly develops from z and z develops from y
adjacent_to
adjacent_to
todo - add to ro/bfo
finishes_axis
A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes_axis x, and x has_end_point p, then x overlaps p
finishes_axis
follows_axis
follows_axis
has_axis
has_axis
has_end_point
A relation between an axis and a part of an organism, in which the part defines the initial point of the axis.
Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point
has_end_point
A relation between an axis and a part of an organism, in which the part defines the initial point of the axis.
BSPO:cjm
has_start_point
A relation between an axis and a part of an organism, in which the part defines the initial point of the axis.
Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point.
has_start_point
A relation between an axis and a part of an organism, in which the part defines the initial point of the axis.
BSPO:cjm
orthogonal_to
crossing at right angles
orthogonal_to
BSPO:cjm
crossing at right angles
overlaps
"(forall (x y) (iff (overlaps x y) (exists (z) (and (part_of z x) (part_of z y)))))" CLIF []
overlaps
x overlaps y iff they have some part in common.
BSPO:cjm
x overlaps y iff they have some part in common.
passes_through
Intersects at two points.
passes_through
BSPO:cjm
Intersects at two points.
starts_axis
A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts_axis x, and x has_start_point p, then x overlaps p
starts_axis
surface_of
placeholder. used for relation between anatomical surface and an anatomical side.
surface_of
entity
continuant
occurrent
An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.
a surgical operation as processual context for a nosocomical infection
occurrent
perdurant
the life of an organism
the most interesting part of Van Gogh's life
the spatiotemporal context occupied by a process of cellular meiosis
the spatiotemporal region occupied by the development of a cancer tumor
independent continuant
process
A processual entity that is a maximally connected spatiotemporal whole and has bona fide beginnings and endings corresponding to real discontinuities.
process
the life of an organism
the process of cell-division
the process of sleeping
material entity
left side
BSPO:0000000
left
upper side
BSPO:0000001
upper
lower side
BSPO:0000002
lower
deep-superficial gradient (obsolete)
BSPO:00000021
BSPO:0000021
true
was made obsolete because the ID had too many digits
deep side
BSPO:0000003
deep
superficial side
BSPO:0000004
superficial
anatomical surface
A 2D surface of an anatomical continuant
BSPO:0000005
surface
to be merged into CARO
A 2D surface of an anatomical continuant
BSPO:cjm
anatomical margin
BSPO:0000006
edge
fiat region extending a short distance from the boundary of an object inwards
margin
BSPO:cjm
fiat region extending a short distance from the boundary of an object inwards
right side
BSPO:0000007
right
parasagittal section
BSPO:0000008
Sagittal section that divides bilateral body into unequal equal left and right sections.
BSPO:mah
Sagittal section that divides bilateral body into unequal equal left and right sections.
midsaggital section
BSPO:0000009
FMA:74563
Sagittal section that divides bilateral body into equal left and right sections.
median plane
median sagittal plane
midsagittal plane
BSPO:mah
Sagittal section that divides bilateral body into equal left and right sections.
anatomical axis
A straight line through space, intersecting an anatomical entity.
BSPO:0000010
axis directions are defined in terms of axes
http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
A straight line through space, intersecting an anatomical entity.
BSPO:cjm
upper/lower axis
An anatomical axis determined by gravity.
BSPO:0000011
An anatomical axis determined by gravity.
BSPO:cjm
deep/superficial axis
BSPO:0000012
anterior/posterior axis
A-P axis
AP axis
An axis that bisects an organism from head end to opposite end of body or tail.
BSPO:0000013
anteroposterior axis
cephalocaudal axis
craniocaudal axis
rostral/caudal
rostrocaudal axis
cephalocaudal axis
http://en.wikipedia.org/wiki/Anatomical_terms_of_location
craniocaudal axis
An axis that bisects an organism from head end to opposite end of body or tail.
BSPO:cjm
rostrocaudal axis
rostral/caudal
apical/basal axis
BSPO:0000014
In plants, this is the axis that runs from the shoot to the root.
apical/basal
longitudinal axis
proximal/distal axis
BSPO:0000015
from tip of an appendage (distal) to where it joins the body (proximal).
proximal/distal
proximodistal
from tip of an appendage (distal) to where it joins the body (proximal).
http://en.wikipedia.org/wiki/Anatomical_terms_of_location
dorsal/ventral axis
An axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
BSPO:0000016
dorsoventral axis
An axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly).
BSPO:cjm
left/right axis
An axis that bisects an organism from left to right sides of body, through a sagittal section.
BSPO:0000017
dextro-sinister axis
left to right axis
An axis that bisects an organism from left to right sides of body, through a sagittal section.
BSPO:cjm
transverse section
Anatomical section that divides body into anterior and posterior sections.
BSPO:0000018
FMA:12247
axial plane
axial section
cross-section
transverse plane
Anatomical section that divides body into anterior and posterior sections.
BSPO:mah
horizontal section
Anatomical section that divides bilateral body into dorsal and ventral sections.
BSPO:0000019
FMA:52810
coronal section
frontal section
Anatomical section that divides bilateral body into dorsal and ventral sections.
BSPO:mah
upper-lower gradient
BSPO:0000020
deep-superficial gradient
BSPO:0000021
superior side
BSPO:0000022
superior
apical-basal gradient
BSPO:0000023
proximal-distal gradient
BSPO:0000024
inferior side
BSPO:0000025
inferior
antero-dorsal region
2009-06-15T01:01:38Z
BSPO:0000026
Melissa Haendel
anterodorsal region
antero-ventral region
2009-06-15T01:04:59Z
BSPO:0000027
Melissa Haendel
anteroventral region
postero-lateral region
2009-06-15T01:06:01Z
BSPO:0000028
Melissa Haendel
posterolateral region
antero-lateral region
2009-06-15T01:07:18Z
BSPO:0000029
Melissa Haendel
anterolateral region
postero-dorsal region
2009-06-15T01:08:13Z
BSPO:0000030
Melissa Haendel
posterodorsal region
upper region
BSPO:0000031
lower region
BSPO:0000032
deep region
BSPO:0000033
superficial region
BSPO:0000034
postero-ventral region
2009-06-15T01:08:38Z
BSPO:0000035
Melissa Haendel
posteroventral region
anterior-most
2009-06-16T08:49:03Z
BSPO:0000036
Melissa Haendel
anteriormost
posterior-most
2009-06-16T08:49:50Z
BSPO:0000037
Melissa Haendel
posteriormost
dorsal-most
2009-06-16T08:50:26Z
BSPO:0000038
Melissa Haendel
dorsalmost
ventral-most
2009-06-16T08:51:07Z
BSPO:0000039
Melissa Haendel
ventralmost
upper/lower compartment boundary
BSPO:0000040
deep/superficial compartment boundary
BSPO:0000041
antero-medial margin
2009-09-10T08:49:57Z
BSPO:0000042
Melissa Haendel
anteromedial margin
apical/basal compartment boundary
BSPO:0000043
proximal/distal compartment boundary
BSPO:0000044
antero-lateral margin
2009-09-10T08:50:37Z
BSPO:0000045
Melissa Haendel
anterolateral margin
postero-medial margin
2009-09-10T08:51:07Z
BSPO:0000046
Melissa Haendel
posteromedial margin
postero-lateral margin
2009-09-10T08:51:42Z
BSPO:0000047
Melissa Haendel
postero-lateral margin
dorso-medial margin
2009-09-10T08:52:04Z
BSPO:0000048
Melissa Haendel
dorso-medial margin
ventro-medial margin
2009-09-10T08:52:48Z
BSPO:0000049
Melissa Haendel
ventromedial margin
antero-medial region
2009-09-10T08:55:32Z
BSPO:0000050
Melissa Haendel
anteromedial region
anatomical gradient
A region defined by change in the value of some quantity per unit of distance across some spatial axis.
BSPO:0000051
FBql:00005254
A region defined by change in the value of some quantity per unit of distance across some spatial axis.
BSPO:cjm
anterior-posterior gradient
BSPO:0000052
FBcv:0000142
FBql:00005256
dorsal-ventral gradient
BSPO:0000053
FBcv:0000143
FBql:00005255
anatomical side
An anatomical region bounded by a plane perpendicular to an axis through the middle.
BSPO:0000054
FBql:00005841
An anatomical region bounded by a plane perpendicular to an axis through the middle.
BSPO:cjm
anterior side
BSPO:0000055
FBcv:0000053
FBql:00005848
anterior
rostral
posterior side
BSPO:0000056
FBcv:0000065
FBql:00005849
caudal
posterior
caudal
apical side
BSPO:0000057
FBcv:0000054
FBql:00005854
apical
basal side
BSPO:0000058
FBcv:0000055
FBql:00005855
The part of the organism attached to a substrate. Axis of symmetry.
basal
central side
BSPO:0000059
FBcv:0000056
FBql:00015851
central
central is not an axis direction
contralateral side
BSPO:0000060
FBcv:0000057
FBql:00005851
On the opposite side
contralateral
inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
BSPO:cjm
On the opposite side
proximal side
BSPO:0000061
FBcv:0000066
FBql:00005852
proximal
distal side
BSPO:0000062
FBcv:0000058
FBql:00005853
distal
dorsal side
BSPO:0000063
FBcv:0000059
FBql:00005842
dorsal
rename to 'dorsally located'?
postero-medial region
2009-09-10T08:56:39Z
BSPO:0000064
Melissa Haendel
posteromedial region
ipsilateral side
BSPO:0000065
FBcv:0000062
FBql:00005850
On the same side
inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
ipsilateral
BSPO:cjm
On the same side
lateral side
BSPO:0000066
FBcv:0000063
FBql:00005844
lateral
medial side
BSPO:0000067
FBcv:0000064
FBql:00005847
a point in the centre of the organism (where the left-right axis intersects the midsagittal plane)
medial
ventral side
BSPO:0000068
FBcv:0000070
FBql:00005843
ventral
dorso-medial region
2009-09-10T08:57:22Z
BSPO:0000069
Melissa Haendel
dorsomedial region
anatomical region
A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm.
BSPO:0000070
FBql:00005841
to be merged into CARO
A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm.
BSPO:cjm
anterior region
BSPO:0000071
FBql:00005848
posterior region
BSPO:0000072
FBql:00005849
apical region
BSPO:0000073
FBql:00005854
basal region
BSPO:0000074
FBql:00005855
central region
BSPO:0000075
FBql:00015851
contralateral region
BSPO:0000076
FBql:00005851
inherited from flybase cv. not clear how this would be used
proximal region
BSPO:0000077
FBql:00005852
distal region
BSPO:0000078
FBql:00005853
dorsal region
BSPO:0000079
FBql:00005842
dorso-lateral region
BSPO:0000080
FBql:00005845
dorsolateral region
ipsilateral region
BSPO:0000081
FBql:00005850
lateral region
BSPO:0000082
FBql:00005844
medial region
BSPO:0000083
FBql:00005847
ventral region
BSPO:0000084
FBql:00005843
ventro-lateral region
BSPO:0000085
FBql:00005846
This is an example of a composition of two axis positions
ventrolateral region
anatomical compartment
BSPO:0000086
FBql:00005873
to be merged into CARO
anterior compartment
BSPO:0000087
FBcv:0000031
FBql:00005874
compartment boundary
BSPO:0000088
FBcv:0000032
FBql:00005878
dorsal compartment
BSPO:0000089
FBcv:0000035
FBql:00005876
posterior compartment
BSPO:0000090
FBcv:0000036
FBql:00005875
ventral compartment
BSPO:0000091
FBcv:0000037
FBql:00005877
anatomical compartment boundary
BSPO:0000092
FBql:00005881
to be merged into CARO
anterior/posterior compartment boundary
BSPO:0000093
FBcv:0000033
FBql:00005880
dorsal/ventral compartment boundary
BSPO:0000094
FBcv:0000034
FBql:00005879
ventro-medial region
2009-09-10T08:57:54Z
BSPO:0000112
Melissa Haendel
ventromedial region
anterior surface
BSPO:0000371
FBql:00005848
posterior surface
BSPO:0000372
FBql:00005849
apical surface
BSPO:0000373
FBql:00005854
basal surface
BSPO:0000374
FBql:00005855
contralateral surface
BSPO:0000376
FBql:00005851
proximal surface
BSPO:0000377
FBql:00005852
distal surface
BSPO:0000378
FBql:00005853
dorsal surface
BSPO:0000379
FBql:00005842
ipsilateral surface
BSPO:0000381
FBql:00005850
lateral surface
BSPO:0000382
FBql:00005844
medial surface
BSPO:0000383
FBql:00005847
ventral surface
BSPO:0000384
FBql:00005843
anatomical section
A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions.
BSPO:0000400
FMA:242982
These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical.
anatomical cross-section
cross-section
plane
section
A flat 2D plane intersecting an anatomical continuant, dividing it into two adjacent portions.
BSPO:cjm
sagittal section
Anatomical section that divides bilateral body into roughly mirror image left and right sections. Bilaterally symmetric organisms have a single sagittal plane.
BSPO:0000417
FMA:11361
left/right plane
median plane
sagittal plane
Anatomical section that divides bilateral body into roughly mirror image left and right sections. Bilaterally symmetric organisms have a single sagittal plane.
BSPO:cjm
BSPO:mah
anterior margin
BSPO:0000671
posterior margin
BSPO:0000672
apical margin
BSPO:0000673
basal margin
BSPO:0000674
proximal margin
BSPO:0000677
distal margin
BSPO:0000678
dorsal margin
BSPO:0000679
dorso-lateral margin
BSPO:0000680
dorsolateral margin
lateral margin
BSPO:0000682
medial margin
BSPO:0000683
ventral margin
BSPO:0000684
ventro-lateral margin
BSPO:0000685
This is an example of a composition of two axis positions
ventrolateral margin
antero-dorsal margin
BSPO:0000686
anterodorsal margin
postero-dorsal margin
BSPO:0000687
posterodorsal margin
antero-ventral margin
BSPO:0000688
anteroventral margin
postero-ventral margin
BSPO:0000689
posteroventral margin
medial axis
BSPO:0001001
From centre of organism to one or other side.
ML axis
Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart.
http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
medio-lateral axis
mediolateral axis
BSPO:cjm
From centre of organism to one or other side.
anatomical entity
Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.
CARO:0000000
Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species.
CARO:MAH
anatomical structure
material anatomical entity
cell component
multi-cell-component structure
neuron projection bundle
multicellular anatomical structure
cell
neuron
habitat
A spatial region having environmental qualities which may sustain an organism or a community of organisms.
membrane
axon
dendrite
presynaptic membrane
cell projection
neuron projection
synapse part
cell part
synapse
postsynaptic membrane