@article{4020, title = "Simulating cardiac electrophysiology using anisotropic mesh adaptivity", author = "J Southern, GJ Gorman, MD Piggott, PE Farrell, MO Bernabeu, J Pitt-Francis", year = "2010", journal = "Journal of computational science", number = "1", pages = "82-88", } @article{3745, title = "Stimulus protocol determines the most computationally-efficient preconditioner for the bidomain equations", author = "M. Bernabeu, P. Pathmanathan, J. Pitt-Francis, D. Kay", year = "2010", journal = "Transactions of Biomedical Engineering (in press)", } @article{pitt2010high, title = "High-throughput cardiac science on the grid", author = "Pitt-Francis, J. and Rodriguez, B. and others", year = "2010", journal = "Phil. Trans. R. Soc. A", pages = "3907-3923", doi = "10.1098/rsta.2010.0170", } @article{3940, title = "A numerical guide to the solution of the bidomain equations of cardiac electrophysiology", author = "Pathmanathan, P. and Bernabeu, M.O. and Bordas, R. and Cooper, J. and Garny, A. and Pitt-Francis, J. and Whiteley, J.P. and Gavaghan, D.J.", year = "2010", journal = "Progress in Biophysics and Molecular Biology", number = "(2-3)", pages = "136-155", volume = "102", doi = "10.1016/j.pbiomolbio.2010.05.006", } @article{4051, title = "Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically-Based Models", author = "Bernabeu MO, Corrias A, Pitt-Francis J, Rodriguez B, Bethwaite B, Enticott C, Garic S, Peachey T, Tan J, Abramson D, Gavaghan D", year = "2009", journal = "Computers in Cardiology", } @article{ChasteCPC09, title = "Chaste: A test-driven approach to software development for biological modelling", author = "J. Pitt-Francis and P. Pathmanathan and M.O. Bernabeu and R. Bordas and J. Cooper and A.G. Fletcher and G.R. Mirams and P. Murray and J.M. Osborne and A. Walter and S.J. Chapman and A. Garny and I.M.M. van Leeuwen and P.K. Maini and B. Rodriguez and S.L. Waters and J.P. Whiteley and H.M. Byrne and D.J. Gavaghan", year = "2009", journal = "Computer Physics Communications", number = "12", pages = "2452-2471", volume = "180", doi = "10.1016/j.cpc.2009.07.019", } @article{chaste_dtm, title = "A computational study of discrete mechanical tissue models", author = "P Pathmanathan and J Cooper and A Fletcher and G Mirams and P Murray and J Osborne and J Pitt-Francis and A Walter and S J Chapman", year = "2009", journal = "Physical Biology", number = "3", volume = "6", doi = "10.1088/1478-3975/6/3/036001", } @article{HPC, title = "Simulation of Cardiac Electrophysiology on Next-Generation High-Performance Computers", author = "Rafel Bordas and Bruno Carpentieri and Giorgio Fotia and Fabio Maggio and Ross Nobes and Joe Pitt-Francis and James Southern", year = "2009", journal = "Phil Trans Roy Soc (A)", number = "1895", pages = "1951-1969", volume = "367", doi = "10.1098/rsta.2008.0298", } @article{cancerchaste1, title = "An integrative computational model for intestinal tissue renewal", author = "IMM van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, S Varma, SJ Young, J Cooper, B Doyle, J Pitt-Francis, L Momtahan, P Pathmanathan, JP Whiteley, SJ Chapman, DJ Gavaghan, OE Jensen, JR King, PK Maini, SL Waters, HM Byrne", year = "2009", journal = "Cell Proliferation", keywords = "Wnt signalling, Crypt dynamics, Cell cycle, Colorectal cancer, Stem cells", pages = "617-636", volume = "42", doi = "10.1111/j.1365-2184.2009.00627.x", } @article{Chaste2, title = "Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library", author = "Bernabeu, M.O. and Bordas, R. and Pathmanathan, P. and Pitt-Francis, J. and Cooper, J. and Garny, A. and Gavaghan, D.J. and Rodriguez, B. and Southern, J.A. and Whiteley, J.P.", year = "2009", journal = "Phil Trans Roy Soc (A)", month = "May", number = "1895", pages = "1907-1930", volume = "367", doi = "10.1098/rsta.2008.0309", } @article{CompCardiol2008, title = "High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para-cellular resolution", author = "Bernabeu MO, Bishop MJ, Pitt-Francis J, Gavaghan DJ, Grau V, Rodriguez B", year = "2008", journal = "Computers in Cardiology", } @article{4021, title = "Multi-scale computational modelling in biology and physiology.", author = "James Southern and Joe Pitt-Francis and Jonathan Whiteley and Daniel Stokeley and Hiromichi Kobashi and Ross Nobes and Yoshimasa Kadooka and David Gavaghan", year = "2008", journal = "Progress in Biophysics and Molecular Biology", number = "1-3", pages = "60-89", volume = "96", } @article{Chaste.08:Chaste, title = "Chaste: Using Agile Programming Techniques to Develop Computational Biology Software", author = "Joe Pitt-Francis and Miguel O. Bernabeu and Jonathan Cooper and Alan Garny and Lee Momtahan and James Osborne and Pras Pathmanathan and Blanca Rodriguez and Jonathan P. Whiteley and David J. Gavaghan", year = "2008", journal = "Philosophical Transactions of the Royal Society A", number = "1878", pages = "3111-3136", volume = "366", doi = "10.1098/rsta.2008.0096", }