@article{IJNMBE2011a,
  title = "The significant effect of the choice of ionic current integration method in cardiac electrophysiological simulations",
  author = "P.\ Pathmanathan, G.R.\ Mirams, J.A.\ Southern, and J.P.\ Whiteley",
  year = "2011",
  journal = "International Journal for Numerical Methods in Biomedical Engineering",
  pages = "1751--1770",
  volume = "27",
  doi = "10.1002/cnm.1438",
}
@article{f20ea8a70f839df,
  title = "A hybrid approach to multi-scale modelling of cancer",
  author = "Osborne, J. M. and Walter, A. and Kershaw, S. K. and Mirams, G. R. and Fletcher, A. G. and Pathmanathan, P. and Gavaghan, D. and Jensen, O. E. and Maini, P. K. and Byrne, H. M.",
  year = "2010",
  journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
  month = "Nov",
  number = "1930",
  pages = "5013--5028",
  volume = "368",
  doi = "10.1098/rsta.2010.0173",
}
@article{3940,
  title = "A numerical guide to the solution of the bidomain equations of cardiac electrophysiology",
  author = "Pathmanathan, P. and Bernabeu, M.O. and Bordas, R. and Cooper, J. and Garny, A. and Pitt-Francis, J. and Whiteley, J.P. and Gavaghan, D.J.",
  year = "2010",
  journal = "Progress in Biophysics and Molecular Biology",
  number = "(2-3)",
  pages = "136-155",
  volume = "102",
  doi = "10.1016/j.pbiomolbio.2010.05.006",
}
@article{3745,
  title = "Stimulus protocol determines the most computationally-efficient preconditioner for the bidomain equations",
  author = "M. Bernabeu, P. Pathmanathan, J. Pitt-Francis, D. Kay",
  year = "2010",
  journal = "Transactions of Biomedical Engineering (in press)",
}
@article{3651,
  title = "Cardiac electromechanics: the effect of contraction model on the mathematical problem and accuracy of the numerical scheme",
  author = "P Pathmanathan, SJ Chapman, DJ Gavaghan, JP Whiteley",
  year = "2010",
  edition = "63",
  journal = "Quarterly Journal of Mechanics and Applied Mathematics",
  pages = "375-399",
  volume = "3",
}
@article{Whiteley 2010a,
  title = "A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems",
  author = "P Pathmanathan, JP Whiteley, SJ Chapman and DJ Gavaghan",
  year = "2010",
  journal = "Journal of Applied Mechanics",
  pages = "034501",
  volume = "77",
  doi = "10.1115/1.4000414",
}
@article{cancerchaste1,
  title = "An integrative computational model for intestinal tissue renewal",
  author = "IMM van Leeuwen, GR Mirams, A Walter, A Fletcher, P Murray, J Osborne, S Varma, SJ Young, J Cooper, B Doyle, J Pitt-Francis, L Momtahan, P Pathmanathan, JP Whiteley, SJ Chapman, DJ Gavaghan, OE Jensen, JR King, PK Maini, SL Waters, HM Byrne",
  year = "2009",
  journal = "Cell Proliferation",
  keywords = "Wnt signalling, Crypt dynamics, Cell cycle, Colorectal cancer, Stem cells",
  pages = "617-636",
  volume = "42",
  doi = "10.1111/j.1365-2184.2009.00627.x",
}
@article{ChasteCPC09,
  title = "Chaste: A test-driven approach to software development for biological modelling",
  author = "J. Pitt-Francis and P. Pathmanathan and M.O. Bernabeu and R. Bordas and J. Cooper and A.G. Fletcher and G.R. Mirams and P. Murray and J.M. Osborne and A. Walter and S.J. Chapman and A. Garny and I.M.M. van Leeuwen and P.K. Maini and B. Rodriguez and S.L. Waters and J.P. Whiteley and H.M. Byrne and D.J. Gavaghan",
  year = "2009",
  journal = "Computer Physics Communications",
  number = "12",
  pages = "2452-2471",
  volume = "180",
  doi = "10.1016/j.cpc.2009.07.019",
}
@article{f20ea014d69195c,
  title = "Inverse membrane problems in elasticity",
  author = "Pathmanathan, P. and Chapman, SJ and Gavaghan, DJ",
  year = "2009",
  issn = "00335614",
  journal = "QUARTERLY JOURNAL OF MECHANICS AND APPLIED MATHEMATICS    ",
  keywords = "breast",
  month = "Feb",
  number = "1",
  pages = "67--87",
  url = "http://dx.doi.or",
  volume = "62",
  doi = "10.1093/qjmam/hbn026",
}
@article{3272,
  title = "A comparison of numerical methods used for finite element modelling of soft tissue deformation",
  author = "P Pathmanathan, DJ Gavaghan and JP Whiteley",
  year = "2009",
  journal = "The Journal of Strain Analysis for Engineering Design",
  pages = "391-406",
  volume = "44(5)",
}
@article{3269,
  title = "A Numerical Method for Cardiac Mechanoelectric Simulations",
  author = "P. Pathmanathan and J.P. Whiteley",
  year = "2009",
  journal = "Annals of Biomedical Engineering",
  pages = "860-873",
  volume = "37(5)",
  doi = "10.1007/s10439-009-9663-8",
}
@article{chaste_dtm,
  title = "A computational study of discrete mechanical tissue models",
  author = "P Pathmanathan and J Cooper and A Fletcher and G Mirams and P Murray and J Osborne and J Pitt-Francis and A Walter and S J Chapman",
  year = "2009",
  journal = "Physical Biology",
  number = "3",
  volume = "6",
  doi = "10.1088/1478-3975/6/3/036001",
}
@article{Chaste2,
  title = "Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library",
  author = "Bernabeu, M.O. and Bordas, R. and Pathmanathan, P. and Pitt-Francis, J. and Cooper, J. and Garny, A. and Gavaghan, D.J. and Rodriguez, B. and Southern, J.A. and Whiteley, J.P.",
  year = "2009",
  journal = "Phil Trans Roy Soc (A)",
  month = "May",
  number = "1895",
  pages = "1907-1930",
  volume = "367",
  doi = "10.1098/rsta.2008.0309",
}
@article{Chaste.08:Chaste,
  title = "Chaste: Using Agile Programming Techniques to Develop Computational Biology Software",
  author = "Joe Pitt-Francis and Miguel O. Bernabeu and Jonathan Cooper and Alan Garny and Lee Momtahan and James Osborne and Pras Pathmanathan and Blanca Rodriguez and Jonathan P. Whiteley and David J. Gavaghan",
  year = "2008",
  journal = "Philosophical Transactions of the Royal Society A",
  number = "1878",
  pages = "3111-3136",
  volume = "366",
  doi = "10.1098/rsta.2008.0096",
}
@article{3270,
  title = "Predicting tumor location by modeling the deformation of the breast",
  author = "P Pathmanathan, DJ Gavaghan, JP Whiteley, SJ Chapman and JM Brady",
  year = "2008",
  journal = "IEEE Transactions on Biomedical Engineering",
  pages = "2471-2480",
  volume = "55(10)",
  doi = "10.1109/TBME.2008.925714",
}
@inproceedings{2004_1,
  title = "Predicting tumour location by simulating large deformations of the breast using a 3D finite element model and nonlinear elasticity",
  author = "P. Pathmanathan and D.J. Gavaghan and J.P. Whiteley and J.M. Brady and M.P. Nash and P.F. Nielsen and V. Rajagopal",
  year = "2004",
  booktitle = "Proceedings of MICCAI 2004",
  pages = "217--224",
  series = "Lecture Notes in Computer Science",
  volume = "3217",
}