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| Uses of OWLOntology in com.clarkparsia.explanation | 
|---|
| Methods in com.clarkparsia.explanation that return OWLOntology | |
|---|---|
 OWLOntology | 
SingleExplanationGeneratorImpl.getOntology()
 | 
 OWLOntology | 
SingleExplanationGenerator.getOntology()
Returns the ontology according to which the explanations are generated.  | 
 OWLOntology | 
HSTExplanationGenerator.getOntology()
 | 
| Methods in com.clarkparsia.explanation with parameters of type OWLOntology | |
|---|---|
 void | 
SingleExplanationGeneratorImpl.setOntology(OWLOntology ontology)
 | 
 void | 
SingleExplanationGenerator.setOntology(OWLOntology ont)
Sets the ontology according to which the explanations are generated.  | 
 void | 
HSTExplanationGenerator.setOntology(OWLOntology ontology)
 | 
| Constructors in com.clarkparsia.explanation with parameters of type OWLOntology | |
|---|---|
DefaultExplanationGenerator(OWLOntologyManager man,
                            OWLReasonerFactory reasonerFactory,
                            OWLOntology ontology,
                            ExplanationProgressMonitor progressMonitor)
 | 
|
DefaultExplanationGenerator(OWLOntologyManager man,
                            OWLReasonerFactory reasonerFactory,
                            OWLOntology ontology,
                            OWLReasoner reasoner,
                            ExplanationProgressMonitor progressMonitor)
 | 
|
| Uses of OWLOntology in com.clarkparsia.explanation.util | 
|---|
| Methods in com.clarkparsia.explanation.util that return types with arguments of type OWLOntology | |
|---|---|
static java.util.Set<OWLOntology> | 
OntologyUtils.removeAxiom(OWLAxiom axiom,
            java.util.Set<OWLOntology> ontologies,
            OWLOntologyManager manager)
Removes an axiom from all the given ontologies that contains the axiom and returns those ontologies.  | 
| Methods in com.clarkparsia.explanation.util with parameters of type OWLOntology | |
|---|---|
static boolean | 
OntologyUtils.containsUnreferencedEntity(OWLOntology ontology,
                           OWLDescription desc)
Determines if a class description contains any unreferenced entities with respect to the ontology that contains the entailments which are being explained.  | 
 void | 
DefinitionTracker.setOntology(OWLOntology ontology)
 | 
| Method parameters in com.clarkparsia.explanation.util with type arguments of type OWLOntology | |
|---|---|
static void | 
OntologyUtils.addAxiom(OWLAxiom axiom,
         java.util.Set<OWLOntology> ontologies,
         OWLOntologyManager manager)
Add the axiom to all the given ontologies.  | 
static java.util.Set<OWLOntology> | 
OntologyUtils.removeAxiom(OWLAxiom axiom,
            java.util.Set<OWLOntology> ontologies,
            OWLOntologyManager manager)
Removes an axiom from all the given ontologies that contains the axiom and returns those ontologies.  | 
| Uses of OWLOntology in de.uulm.ecs.ai.owl.krssparser | 
|---|
| Methods in de.uulm.ecs.ai.owl.krssparser with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
KRSS2OWLParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
 | 
 void | 
KRSS2Parser.setOntology(OWLOntology ontology,
            OWLDataFactory dataFactory)
 | 
| Uses of OWLOntology in de.uulm.ecs.ai.owl.krssrenderer | 
|---|
| Methods in de.uulm.ecs.ai.owl.krssrenderer with parameters of type OWLOntology | |
|---|---|
 void | 
KRSS2OWLSyntaxRenderer.render(OWLOntology ontology,
       java.io.Writer writer)
 | 
 void | 
KRSS2OWLObjectRenderer.visit(OWLOntology ontology)
 | 
| Constructors in de.uulm.ecs.ai.owl.krssrenderer with parameters of type OWLOntology | |
|---|---|
KRSS2OWLObjectRenderer(OWLOntology ontology,
                       java.io.Writer writer)
 | 
|
| Uses of OWLOntology in org.coode.manchesterowlsyntax | 
|---|
| Methods in org.coode.manchesterowlsyntax with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
ManchesterOWLSyntaxOntologyParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
 | 
 OWLImportsDeclaration | 
ManchesterOWLSyntaxEditorParser.parseImportsDeclaration(OWLOntology ont)
 | 
 void | 
ManchesterOWLSyntaxEditorParser.parseOntology(OWLOntologyManager manager,
              OWLOntology ont)
 | 
| Uses of OWLOntology in org.coode.obo.parser | 
|---|
| Methods in org.coode.obo.parser that return OWLOntology | |
|---|---|
 OWLOntology | 
TagValueHandler.getOntology()
 | 
 OWLOntology | 
OBOConsumer.getOntology()
 | 
 OWLOntology | 
AbstractTagValueHandler.getOntology()
 | 
| Methods in org.coode.obo.parser with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
OWLOBOParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
 | 
| Constructors in org.coode.obo.parser with parameters of type OWLOntology | |
|---|---|
OBOConsumer(OWLOntologyManager owlOntologyManager,
            OWLOntology ontology)
 | 
|
| Uses of OWLOntology in org.coode.owl.functionalparser | 
|---|
| Methods in org.coode.owl.functionalparser with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
OWLFunctionalSyntaxOWLParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
 | 
 void | 
OWLFunctionalSyntaxParser.setUp(OWLOntologyManager man,
      OWLOntology ontology)
 | 
| Uses of OWLOntology in org.coode.owl.functionalrenderer | 
|---|
| Methods in org.coode.owl.functionalrenderer with parameters of type OWLOntology | |
|---|---|
 void | 
OWLFunctionalSyntaxRenderer.render(OWLOntology ontology,
       java.io.Writer writer)
 | 
 void | 
OWLObjectRenderer.visit(OWLOntology ontology)
 | 
| Constructors in org.coode.owl.functionalrenderer with parameters of type OWLOntology | |
|---|---|
OWLObjectRenderer(OWLOntologyManager man,
                  OWLOntology ontology,
                  java.io.Writer writer)
 | 
|
| Uses of OWLOntology in org.coode.owl.krssparser | 
|---|
| Methods in org.coode.owl.krssparser with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
KRSSOWLParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
 | 
 void | 
KRSSParser.setOntology(OWLOntology ontology,
            OWLDataFactory dataFactory)
 | 
| Uses of OWLOntology in org.coode.owl.latex | 
|---|
| Methods in org.coode.owl.latex with parameters of type OWLOntology | |
|---|---|
 void | 
LatexRenderer.render(OWLOntology ontology,
       java.io.Writer writer)
 | 
 void | 
LatexObjectVisitor.visit(OWLOntology ontology)
 | 
| Uses of OWLOntology in org.coode.owl.owlxmlparser | 
|---|
| Methods in org.coode.owl.owlxmlparser that return OWLOntology | |
|---|---|
 OWLOntology | 
OWLXMLParserHandler.getOntology()
 | 
 OWLOntology | 
OWLOntologyHandler.getOWLObject()
 | 
 OWLOntology | 
OWLImportsHandler.getOWLObject()
 | 
| Methods in org.coode.owl.owlxmlparser with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
OWLXMLParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
 | 
| Constructors in org.coode.owl.owlxmlparser with parameters of type OWLOntology | |
|---|---|
OWLXMLParserHandler(OWLOntologyManager owlOntologyManager,
                    OWLOntology ontology)
Creates an OWLXML handler.  | 
|
OWLXMLParserHandler(OWLOntologyManager owlOntologyManager,
                    OWLOntology ontology,
                    OWLElementHandler topHandler)
Creates an OWLXML handler with the specified top level handler.  | 
|
| Uses of OWLOntology in org.coode.owl.rdf.model | 
|---|
| Methods in org.coode.owl.rdf.model with parameters of type OWLOntology | |
|---|---|
 void | 
AbstractTranslator.visit(OWLOntology ontology)
 | 
| Constructors in org.coode.owl.rdf.model with parameters of type OWLOntology | |
|---|---|
AbstractTranslator(OWLOntologyManager manager,
                   OWLOntology ontology)
 | 
|
RDFTranslator(OWLOntologyManager manager,
              OWLOntology ontology)
 | 
|
| Uses of OWLOntology in org.coode.owl.rdf.rdfxml | 
|---|
| Constructors in org.coode.owl.rdf.rdfxml with parameters of type OWLOntology | |
|---|---|
RDFXMLNamespaceManager(OWLOntologyManager man,
                       OWLOntology ontology)
 | 
|
RDFXMLNamespaceManager(OWLOntologyManager man,
                       OWLOntology ontology,
                       OWLOntologyFormat format)
 | 
|
RDFXMLRenderer(OWLOntologyManager manager,
               OWLOntology ontology,
               java.io.Writer w)
 | 
|
RDFXMLRenderer(OWLOntologyManager manager,
               OWLOntology ontology,
               java.io.Writer w,
               OWLOntologyFormat format)
 | 
|
| Uses of OWLOntology in org.coode.owl.rdf.renderer | 
|---|
| Methods in org.coode.owl.rdf.renderer that return OWLOntology | |
|---|---|
 OWLOntology | 
RDFRendererBase.getOntology()
 | 
| Constructors in org.coode.owl.rdf.renderer with parameters of type OWLOntology | |
|---|---|
RDFRendererBase(OWLOntology ontology,
                OWLOntologyManager manager)
 | 
|
| Uses of OWLOntology in org.coode.owl.rdf.turtle | 
|---|
| Constructors in org.coode.owl.rdf.turtle with parameters of type OWLOntology | |
|---|---|
TurtleRenderer(OWLOntology ontology,
               OWLOntologyManager manager,
               java.io.Writer writer)
 | 
|
| Uses of OWLOntology in org.coode.owl.rdfxml.parser | 
|---|
| Methods in org.coode.owl.rdfxml.parser that return OWLOntology | |
|---|---|
 OWLOntology | 
OWLRDFConsumer.getOntology()
 | 
| Methods in org.coode.owl.rdfxml.parser with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
RDFXMLParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
 | 
| Constructors in org.coode.owl.rdfxml.parser with parameters of type OWLOntology | |
|---|---|
OWLRDFConsumer(OWLOntologyManager owlOntologyManager,
               OWLOntology ontology,
               AnonymousNodeChecker checker)
 | 
|
| Uses of OWLOntology in org.coode.owlapi.owlxml.renderer | 
|---|
| Methods in org.coode.owlapi.owlxml.renderer with parameters of type OWLOntology | |
|---|---|
 void | 
OWLXMLRenderer.render(OWLOntology ontology,
       java.io.Writer writer)
 | 
 void | 
OWLXMLWriter.startDocument(OWLOntology ontology)
 | 
 void | 
OWLXMLObjectRenderer.visit(OWLOntology ontology)
 | 
| Constructors in org.coode.owlapi.owlxml.renderer with parameters of type OWLOntology | |
|---|---|
OWLXMLObjectRenderer(OWLOntology ontology,
                     OWLXMLWriter writer)
 | 
|
OWLXMLWriter(java.io.Writer writer,
             XMLWriterNamespaceManager xmlWriterNamespaceManager,
             OWLOntology ontology)
 | 
|
| Uses of OWLOntology in org.coode.xml | 
|---|
| Constructors in org.coode.xml with parameters of type OWLOntology | |
|---|---|
OWLOntologyNamespaceManager(OWLOntologyManager man,
                            OWLOntology ontology)
 | 
|
OWLOntologyNamespaceManager(OWLOntologyManager man,
                            OWLOntology ontology,
                            OWLOntologyFormat format)
 | 
|
| Uses of OWLOntology in org.semanticweb.owl | 
|---|
| Constructors in org.semanticweb.owl with parameters of type OWLOntology | |
|---|---|
AddClassDescriptionClosureAxiom(OWLDataFactory dataFactory,
                                OWLClass cls,
                                OWLObjectPropertyExpression property,
                                java.util.Set<OWLOntology> ontologies,
                                OWLOntology targetOntology)
Creates a composite change that will add a closure axiom for a given class along a specified property.  | 
|
ConvertEquivalentClassesToSuperClasses(OWLDataFactory dataFactory,
                                       OWLClass cls,
                                       java.util.Set<OWLOntology> ontologies,
                                       OWLOntology targetOntology,
                                       boolean splitIntersections)
 | 
|
ConvertSuperClassesToEquivalentClass(OWLDataFactory dataFactory,
                                     OWLClass cls,
                                     java.util.Set<OWLOntology> ontologies,
                                     OWLOntology targetOntology)
 | 
|
CreateValuePartition(OWLDataFactory dataFactory,
                     OWLClass valuePartitionClass,
                     java.util.Set<OWLClass> valuePartionClasses,
                     OWLObjectProperty valuePartitionProperty,
                     OWLOntology targetOntology)
Creates a composite change that will create a value partition.  | 
|
MakeClassesMutuallyDisjoint(OWLDataFactory dataFactory,
                            java.util.Set<? extends OWLDescription> descriptions,
                            boolean usePairwiseDisjointAxioms,
                            OWLOntology targetOntology)
Creates a composite change which makes a set of classes mutually disjoint  | 
|
MakePrimitiveSubClassesMutuallyDisjoint(OWLDataFactory dataFactory,
                                        OWLClass cls,
                                        java.util.Set<OWLOntology> ontologies,
                                        OWLOntology targetOntology)
 | 
|
MakePrimitiveSubClassesMutuallyDisjoint(OWLDataFactory dataFactory,
                                        OWLClass cls,
                                        java.util.Set<OWLOntology> ontologies,
                                        OWLOntology targetOntology,
                                        boolean usePairwiseDisjointAxioms)
 | 
|
| Constructor parameters in org.semanticweb.owl with type arguments of type OWLOntology | |
|---|---|
AddClassDescriptionClosureAxiom(OWLDataFactory dataFactory,
                                OWLClass cls,
                                OWLObjectPropertyExpression property,
                                java.util.Set<OWLOntology> ontologies,
                                OWLOntology targetOntology)
Creates a composite change that will add a closure axiom for a given class along a specified property.  | 
|
AmalgamateSubClassAxioms(java.util.Set<OWLOntology> ontologies,
                         OWLDataFactory dataFactory)
 | 
|
CoerceConstantsIntoDataPropertyRange(OWLDataFactory dataFactory,
                                     java.util.Set<OWLOntology> ontologies)
 | 
|
ConvertEquivalentClassesToSuperClasses(OWLDataFactory dataFactory,
                                       OWLClass cls,
                                       java.util.Set<OWLOntology> ontologies,
                                       OWLOntology targetOntology,
                                       boolean splitIntersections)
 | 
|
ConvertPropertyAssertionsToAnnotations(OWLDataFactory dataFactory,
                                       java.util.Set<OWLOntology> ontologies)
 | 
|
ConvertSuperClassesToEquivalentClass(OWLDataFactory dataFactory,
                                     OWLClass cls,
                                     java.util.Set<OWLOntology> ontologies,
                                     OWLOntology targetOntology)
 | 
|
MakePrimitiveSubClassesMutuallyDisjoint(OWLDataFactory dataFactory,
                                        OWLClass cls,
                                        java.util.Set<OWLOntology> ontologies,
                                        OWLOntology targetOntology)
 | 
|
MakePrimitiveSubClassesMutuallyDisjoint(OWLDataFactory dataFactory,
                                        OWLClass cls,
                                        java.util.Set<OWLOntology> ontologies,
                                        OWLOntology targetOntology,
                                        boolean usePairwiseDisjointAxioms)
 | 
|
RemoveAllDisjointAxioms(OWLDataFactory dataFactory,
                        java.util.Set<OWLOntology> ontologies)
 | 
|
SplitSubClassAxioms(java.util.Set<OWLOntology> ontologies,
                    OWLDataFactory dataFactory)
Creates a composite change to split subclass axioms into multiple more fine grained subclass axioms.  | 
|
| Uses of OWLOntology in org.semanticweb.owl.debugging | 
|---|
| Methods in org.semanticweb.owl.debugging that return OWLOntology | |
|---|---|
 OWLOntology | 
OWLDebugger.getOWLOntology()
Gets the OWLOntology that is being debugged. | 
 OWLOntology | 
AbstractOWLDebugger.getOWLOntology()
 | 
| Constructors in org.semanticweb.owl.debugging with parameters of type OWLOntology | |
|---|---|
BlackBoxOWLDebugger(OWLOntologyManager owlOntologyManager,
                    OWLOntology ontology,
                    OWLSatisfiabilityChecker reasoner)
 | 
|
| Uses of OWLOntology in org.semanticweb.owl.inference | 
|---|
| Methods in org.semanticweb.owl.inference that return types with arguments of type OWLOntology | |
|---|---|
 java.util.Set<OWLOntology> | 
OWLReasonerBase.getLoadedOntologies()
Gets the ontologies that have been loaded into this reasoner.  | 
 java.util.Set<OWLOntology> | 
OWLReasonerAdapter.getLoadedOntologies()
 | 
 java.util.Set<OWLOntology> | 
NullReasoner.getLoadedOntologies()
 | 
| Methods in org.semanticweb.owl.inference with parameters of type OWLOntology | |
|---|---|
 boolean | 
OWLConsistencyChecker.isConsistent(OWLOntology ontology)
Checks to see if the ontology that have been loaded into the reasoner are consistent in combination.  | 
 boolean | 
NullReasoner.isConsistent(OWLOntology ontology)
 | 
| Method parameters in org.semanticweb.owl.inference with type arguments of type OWLOntology | |
|---|---|
 void | 
OWLReasonerBase.loadOntologies(java.util.Set<OWLOntology> ontologies)
Loads the specified ontologies.  | 
 void | 
OWLReasonerAdapter.loadOntologies(java.util.Set<OWLOntology> ontologies)
 | 
 void | 
NullReasoner.loadOntologies(java.util.Set<OWLOntology> ontologies)
 | 
 void | 
OWLReasonerBase.unloadOntologies(java.util.Set<OWLOntology> ontologies)
Unloads the specified ontologies from this reasoner.  | 
 void | 
OWLReasonerAdapter.unloadOntologies(java.util.Set<OWLOntology> ontologies)
 | 
 void | 
NullReasoner.unloadOntologies(java.util.Set<OWLOntology> ontologies)
Does nothing in this implementation.  | 
| Uses of OWLOntology in org.semanticweb.owl.io | 
|---|
| Methods in org.semanticweb.owl.io with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
OWLParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
Parses the ontology that has a concrete representation which is pointed to by the specified input source.  | 
 OWLOntologyFormat | 
OWLParser.parse(java.net.URI physicalURI,
      OWLOntology ontology)
Parses the ontology that has a concrete representation which is pointed to by the specified physical URI.  | 
 OWLOntologyFormat | 
AbstractOWLParser.parse(java.net.URI physicalURI,
      OWLOntology ontology)
 | 
 void | 
OWLRenderer.render(OWLOntology ontology,
       java.io.OutputStream os)
Renders the specified ontology to a concrete representation which should be written to a document located at the specified physical URI.  | 
 void | 
AbstractOWLRenderer.render(OWLOntology ontology,
       java.io.OutputStream os)
 | 
abstract  void | 
AbstractOWLRenderer.render(OWLOntology ontology,
       java.io.Writer writer)
Renders the specified ontology using the specified writer.  | 
| Uses of OWLOntology in org.semanticweb.owl.metrics | 
|---|
| Methods in org.semanticweb.owl.metrics that return OWLOntology | |
|---|---|
 OWLOntology | 
OWLMetric.getOntology()
Gets the ontology which the value of the metric should be based on.  | 
 OWLOntology | 
AbstractOWLMetric.getOntology()
 | 
| Methods in org.semanticweb.owl.metrics that return types with arguments of type OWLOntology | |
|---|---|
 java.util.Set<OWLOntology> | 
AbstractOWLMetric.getOntologies()
 | 
| Methods in org.semanticweb.owl.metrics with parameters of type OWLOntology | |
|---|---|
 void | 
OWLMetricManager.setOntology(OWLOntology ontology)
 | 
 void | 
OWLMetric.setOntology(OWLOntology ontology)
Sets the "root" ontology.  | 
 void | 
AbstractOWLMetric.setOntology(OWLOntology ontology)
 | 
| Uses of OWLOntology in org.semanticweb.owl.model | 
|---|
| Subinterfaces of OWLOntology in org.semanticweb.owl.model | |
|---|---|
 interface | 
OWLMutableOntology
Author: Matthew Horridge The University Of Manchester Bio-Health Informatics Group Date: 25-Oct-2006  | 
| Methods in org.semanticweb.owl.model that return OWLOntology | |
|---|---|
 OWLOntology | 
OWLOntologyManager.createOntology(java.util.Set<OWLAxiom> axioms)
Creates a new ontology that is initialised to contain specific axioms.  | 
 OWLOntology | 
OWLOntologyManager.createOntology(java.util.Set<OWLAxiom> axioms,
               java.net.URI ontologyURI)
Creates a new ontology that has the specified ontology URI and is initialised to contain specific axioms.  | 
 OWLOntology | 
OWLOntologyManager.createOntology(java.net.URI ontologyURI)
Creates a new (empty) ontology that has the specified ontology URI.  | 
 OWLOntology | 
OWLOntologyManager.createOntology(java.net.URI ontologyURI,
               java.util.Set<OWLOntology> ontologies)
Creates a new ontology that has the specified ontology URI and is initialised to contain the axioms that are contained in the specified ontologies.  | 
 OWLOntology | 
OWLOntologyManager.createOntology(java.net.URI ontologyURI,
               java.util.Set<OWLOntology> ontologies,
               boolean copyLogicalAxiomsOnly)
Creates a new ontology that has the specified ontology URI and is initialised to contain the axioms that are contained in the specified ontologies.  | 
 OWLOntology | 
OWLOntologyFactory.createOWLOntology(java.net.URI ontologyURI,
                  java.net.URI physicalURI,
                  OWLOntologyFactory.OWLOntologyCreationHandler handler)
Creates an (empty) ontology.  | 
 OWLOntology | 
OWLOntologyManager.getImportedOntology(OWLImportsDeclaration declaration)
Given an imports declaration, obtains the ontology that this imports has been resolved to.  | 
 OWLOntology | 
OWLOntologyChange.getOntology()
Gets the ontology that the change is/was applied to  | 
 OWLOntology | 
OWLOntologyManager.getOntology(java.net.URI ontologyURI)
Gets a previously loaded/created ontology that corresponds to the specified ontology URI.  | 
 OWLOntology | 
OWLImportsDeclaration.getSubject()
Gets the ontology that is the subject of this imports axiom.  | 
 OWLOntology | 
OWLOntologyManager.loadOntology(OWLOntologyInputSource inputSource)
A convenience method that load an ontology from an input source.  | 
 OWLOntology | 
OWLOntologyManager.loadOntology(java.net.URI ontologyURI)
Loads the ontology specified by the ontologyURI parameter. | 
 OWLOntology | 
OWLOntologyManager.loadOntologyFromPhysicalURI(java.net.URI uri)
A convenience method that loads an ontology from a physical URI.  | 
 OWLOntology | 
OWLOntologyFactory.loadOWLOntology(OWLOntologyInputSource inputSource,
                OWLOntologyFactory.OWLOntologyCreationHandler handler)
Creates and loads an OWLOntology. | 
 OWLOntology | 
OWLOntologyManager.reloadOntology(java.net.URI ontologyURI)
Reloads an ontology that is already managed by this manager.  | 
| Methods in org.semanticweb.owl.model that return types with arguments of type OWLOntology | |
|---|---|
 java.util.Set<OWLOntology> | 
OWLOntologyManager.getImports(OWLOntology ontology)
Gets the set of ontologies that are directly imported by the specified ontology.  | 
 java.util.Set<OWLOntology> | 
OWLOntology.getImports(OWLOntologyManager ontologyManager)
Gets the OWLOntology instances that this ontology imports. | 
 java.util.Set<OWLOntology> | 
OWLOntologyManager.getImportsClosure(OWLOntology ontology)
Gets the imports closure for the specified ontology.  | 
 java.util.Set<OWLOntology> | 
OWLOntologySetProvider.getOntologies()
 | 
 java.util.Set<OWLOntology> | 
OWLOntologyManager.getOntologies()
Gets all of the ontologies that are managed by this manager.  | 
 java.util.Set<OWLOntology> | 
OWLOntologyManager.getOntologies(OWLAxiom axiom)
Gets the ontologies that are managed by this manager that contain the specified axiom.  | 
 java.util.List<OWLOntology> | 
OWLOntologyManager.getSortedImportsClosure(OWLOntology ontology)
Gets the topologically ordered imports closure.  | 
| Methods in org.semanticweb.owl.model with parameters of type OWLOntology | |
|---|---|
 java.util.List<OWLOntologyChange> | 
OWLOntologyManager.addAxiom(OWLOntology ont,
         OWLAxiom axiom)
A convenience method that adds a single axioms to an ontology.  | 
 java.util.List<OWLOntologyChange> | 
OWLOntologyManager.addAxioms(OWLOntology ont,
          java.util.Set<? extends OWLAxiom> axioms)
A convenience method that adds a set of axioms to an ontology.  | 
 java.util.Set<OWLAnnotationAxiom> | 
OWLEntity.getAnnotationAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLAxiomAnnotationAxiom> | 
OWLAxiom.getAnnotationAxioms(OWLOntology ontology)
Gets the annotation axioms that annotate this axiom and belong to the specified ontology  | 
 java.util.Set<OWLOntologyAnnotationAxiom> | 
OWLOntology.getAnnotations(OWLOntology subject)
Gets the ontology annotations whose subject is the specified ontology.  | 
 java.util.Set<OWLAnnotation> | 
OWLEntity.getAnnotations(OWLOntology ontology)
Obtains annotations on this entity where the annotation have been asserted on the specified entity.  | 
 java.util.Set<OWLAnnotation> | 
OWLEntity.getAnnotations(OWLOntology ontology,
               java.net.URI annotationURI)
Obtains the annotations on this entity where the annotation has the specified URI.  | 
 java.util.Map<OWLDataPropertyExpression,java.util.Set<OWLConstant>> | 
OWLIndividual.getDataPropertyValues(OWLOntology ontology)
Gets the data property values for this individual  | 
 java.util.Set<OWLIndividual> | 
OWLIndividual.getDifferentIndividuals(OWLOntology ontology)
A convenience method that examines axioms in the specified ontology to determine the individuals that are asserted to be different to this individual.  | 
 java.util.Set<OWLDescription> | 
OWLClass.getDisjointClasses(OWLOntology ontology)
Gets the classes which have been asserted to be disjoint with this class by axioms in the specified ontology.  | 
 java.util.Set<P> | 
OWLPropertyExpression.getDisjointProperties(OWLOntology ontology)
 | 
 java.util.Set<OWLDescription> | 
OWLPropertyExpression.getDomains(OWLOntology ontology)
Gets the asserted domains of this property.  | 
 java.util.Set<OWLDescription> | 
OWLClass.getEquivalentClasses(OWLOntology ontology)
A convenience method that examines the axioms in the specified ontology and returns the descriptions corresponding to equivalent classes of this class.  | 
 java.util.Set<P> | 
OWLPropertyExpression.getEquivalentProperties(OWLOntology ontology)
Gets the asserted/told equivalent properties by examining the axioms in the specified ontology.  | 
 java.util.Set<OWLOntology> | 
OWLOntologyManager.getImports(OWLOntology ontology)
Gets the set of ontologies that are directly imported by the specified ontology.  | 
 java.util.Set<OWLOntology> | 
OWLOntologyManager.getImportsClosure(OWLOntology ontology)
Gets the imports closure for the specified ontology.  | 
 java.util.Set<OWLIndividual> | 
OWLClass.getIndividuals(OWLOntology ontology)
Gets the individuals that have been asserted to be an instance of this class by axioms in the speficied ontology.  | 
 java.util.Set<OWLObjectPropertyExpression> | 
OWLObjectPropertyExpression.getInverses(OWLOntology ontology)
 | 
 java.util.Map<OWLDataPropertyExpression,java.util.Set<OWLConstant>> | 
OWLIndividual.getNegativeDataPropertyValues(OWLOntology ontology)
Gets the data property values that are explicitly asserted NOT to hold for this individual  | 
 java.util.Map<OWLObjectPropertyExpression,java.util.Set<OWLIndividual>> | 
OWLIndividual.getNegativeObjectPropertyValues(OWLOntology ontology)
Gets the object property values that are explicitly asserted NOT to hold for this individual  | 
 java.util.Map<OWLObjectPropertyExpression,java.util.Set<OWLIndividual>> | 
OWLIndividual.getObjectPropertyValues(OWLOntology ontology)
Gets the object property values for this individual.  | 
 OWLOntologyFormat | 
OWLOntologyManager.getOntologyFormat(OWLOntology ontology)
Gets the ontology format for the specified ontology.  | 
 OWLImportsDeclaration | 
OWLDataFactory.getOWLImportsDeclarationAxiom(OWLOntology subject,
                              java.net.URI importedOntologyURI)
 | 
 OWLOntologyAnnotationAxiom | 
OWLDataFactory.getOWLOntologyAnnotationAxiom(OWLOntology subject,
                              OWLAnnotation annotation)
 | 
 java.net.URI | 
OWLOntologyManager.getPhysicalURIForOntology(OWLOntology ontology)
Gets the physical URI for a given ontology.  | 
 java.util.Set<R> | 
OWLPropertyExpression.getRanges(OWLOntology ontology)
Gets the ranges of this property that have been asserted in the specified ontology.  | 
 java.util.Set<OWLIndividual> | 
OWLIndividual.getSameIndividuals(OWLOntology ontology)
A convenience method that examines axioms in the specified ontology to determine the individuals that are asserted to be the same as this individual.  | 
 java.util.List<OWLOntology> | 
OWLOntologyManager.getSortedImportsClosure(OWLOntology ontology)
Gets the topologically ordered imports closure.  | 
 java.util.Set<OWLDescription> | 
OWLClass.getSubClasses(OWLOntology ontology)
Gets the classes which have been asserted to be subclasses of this class in the specified ontology.  | 
 java.util.Set<P> | 
OWLPropertyExpression.getSubProperties(OWLOntology ontology)
Gets the asserted/told sub properties by examining the axioms in the specified ontology.  | 
 java.util.Set<OWLDescription> | 
OWLClass.getSuperClasses(OWLOntology ontology)
A convenience method that examines the axioms in the specified ontology and return the descriptions corresponding to super classes of this class.  | 
 java.util.Set<P> | 
OWLPropertyExpression.getSuperProperties(OWLOntology ontology)
Gets the asserted/told super properties by examining the axioms in the specified ontology.  | 
 java.util.Set<OWLDescription> | 
OWLIndividual.getTypes(OWLOntology ontology)
A convenience method, which gets the types of this individual, that correspond to the types asserted with axioms in the specified ontology.  | 
 boolean | 
OWLObjectPropertyExpression.isAntiSymmetric(OWLOntology ontology)
Deprecated. use isAsymmetric instead.  | 
 boolean | 
OWLObjectPropertyExpression.isAsymmetric(OWLOntology ontology)
 | 
 boolean | 
OWLClass.isDefined(OWLOntology ontology)
Determines if this class has at least one equivalent class in the specified ontology.  | 
 boolean | 
OWLPropertyExpression.isFunctional(OWLOntology ontology)
Determines if this property is functional in the specified ontology  | 
 boolean | 
OWLObjectPropertyExpression.isInverseFunctional(OWLOntology ontology)
Determines if the specified ontology specifies that this property is inverse functional.  | 
 boolean | 
OWLObjectPropertyExpression.isIrreflexive(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpression.isReflexive(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpression.isSymmetric(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpression.isTransitive(OWLOntology ontology)
 | 
 void | 
OWLOntologyFactory.OWLOntologyCreationHandler.ontologyCreated(OWLOntology ontology)
The factory calls this method as soon as it has created an ontology.  | 
 void | 
OWLOntologyManager.saveOntology(OWLOntology ontology)
Saves the specified ontology.  | 
 void | 
OWLOntologyManager.saveOntology(OWLOntology ontology,
             OWLOntologyFormat ontologyFormat)
 | 
 void | 
OWLOntologyManager.saveOntology(OWLOntology ontology,
             OWLOntologyFormat ontologyFormat,
             OWLOntologyOutputTarget outputTarget)
 | 
 void | 
OWLOntologyManager.saveOntology(OWLOntology ontology,
             OWLOntologyFormat ontologyFormat,
             java.net.URI physcialURI)
 | 
 void | 
OWLOntologyManager.saveOntology(OWLOntology ontology,
             OWLOntologyOutputTarget outputTarget)
 | 
 void | 
OWLOntologyManager.saveOntology(OWLOntology ontology,
             java.net.URI physicalURI)
Saves the specified ontology, using the specified URI to determine where/how the ontology should be saved.  | 
 void | 
OWLOntologyManager.setOntologyFormat(OWLOntology ontology,
                  OWLOntologyFormat ontologyFormat)
Sets the format for the specified ontology.  | 
 void | 
OWLOntologyFactory.OWLOntologyCreationHandler.setOntologyFormat(OWLOntology ontology,
                  OWLOntologyFormat format)
 | 
 void | 
OWLOntologyManager.setPhysicalURIForOntology(OWLOntology ontology,
                          java.net.URI physicalURI)
Overrides the current physical URI for a given ontology.  | 
 void | 
OWLOntologyStorer.storeOntology(OWLOntologyManager manager,
              OWLOntology ontology,
              OWLOntologyOutputTarget target,
              OWLOntologyFormat format)
Stores an ontology to the specified target.  | 
 void | 
OWLOntologyStorer.storeOntology(OWLOntologyManager manager,
              OWLOntology ontology,
              java.net.URI physicalURI,
              OWLOntologyFormat ontologyFormat)
Stores an ontology at the specified physical URI in the specified format.  | 
 void | 
OWLObjectVisitor.visit(OWLOntology ontology)
 | 
 O | 
OWLNamedObjectVisitorEx.visit(OWLOntology ontology)
 | 
 void | 
OWLNamedObjectVisitor.visit(OWLOntology ontology)
 | 
| Method parameters in org.semanticweb.owl.model with type arguments of type OWLOntology | |
|---|---|
 OWLOntology | 
OWLOntologyManager.createOntology(java.net.URI ontologyURI,
               java.util.Set<OWLOntology> ontologies)
Creates a new ontology that has the specified ontology URI and is initialised to contain the axioms that are contained in the specified ontologies.  | 
 OWLOntology | 
OWLOntologyManager.createOntology(java.net.URI ontologyURI,
               java.util.Set<OWLOntology> ontologies,
               boolean copyLogicalAxiomsOnly)
Creates a new ontology that has the specified ontology URI and is initialised to contain the axioms that are contained in the specified ontologies.  | 
 java.util.Set<OWLDescription> | 
OWLClass.getDisjointClasses(java.util.Set<OWLOntology> ontologies)
Gets the classes which have been asserted to be disjoint with this class by axioms in the specified ontologies.  | 
 java.util.Set<P> | 
OWLPropertyExpression.getDisjointProperties(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLDescription> | 
OWLPropertyExpression.getDomains(java.util.Set<OWLOntology> ontologies)
Gets the asserted domains of this property by examining the axioms in the specified ontologies.  | 
 java.util.Set<OWLDescription> | 
OWLClass.getEquivalentClasses(java.util.Set<OWLOntology> ontologies)
A convenience method that examines the axioms in the specified ontologies and returns the descriptions corresponding to equivalent classes of this class.  | 
 java.util.Set<P> | 
OWLPropertyExpression.getEquivalentProperties(java.util.Set<OWLOntology> ontologies)
Gets the asserted equivalent properties by examining the axioms in the specified ontologies.  | 
 java.util.Set<OWLIndividual> | 
OWLClass.getIndividuals(java.util.Set<OWLOntology> ontologies)
Gets the individuals that have been asserted to be an instance of this class by axioms in the speficied ontologies.  | 
 java.util.Set<OWLObjectPropertyExpression> | 
OWLObjectPropertyExpression.getInverses(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<R> | 
OWLPropertyExpression.getRanges(java.util.Set<OWLOntology> ontologies)
Gets the asserted ranges of this property by examining the axioms in the specified ontologies.  | 
 java.util.Set<OWLDescription> | 
OWLClass.getSubClasses(java.util.Set<OWLOntology> ontologies)
Gets the classes which have been asserted to be subclasses of this class in the specified ontologies.  | 
 java.util.Set<P> | 
OWLPropertyExpression.getSubProperties(java.util.Set<OWLOntology> ontologies)
Gets the asserted sub properties by examining the axioms in the specified ontologies.  | 
 java.util.Set<OWLDescription> | 
OWLClass.getSuperClasses(java.util.Set<OWLOntology> ontologies)
A convenience method that examines the axioms in the specified ontologies and returns the description corresponding to the asserted super classes of this class.  | 
 java.util.Set<P> | 
OWLPropertyExpression.getSuperProperties(java.util.Set<OWLOntology> ontologies)
Gets the asserted super properties by examining the axioms in the specified set of ontologies.  | 
 java.util.Set<OWLDescription> | 
OWLIndividual.getTypes(java.util.Set<OWLOntology> ontologies)
A convenience method that gets the types of this individual by examining the specified ontologies.  | 
 boolean | 
OWLObjectPropertyExpression.isAntiSymmetric(java.util.Set<OWLOntology> ontologies)
Deprecated. use isAsymmetric instead.  | 
 boolean | 
OWLObjectPropertyExpression.isAsymmetric(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLClass.isDefined(java.util.Set<OWLOntology> ontologies)
Determines if this class has at least one equvialent class specified by an equvialent classes axiom in one of the ontologies.  | 
 boolean | 
OWLPropertyExpression.isFunctional(java.util.Set<OWLOntology> ontologies)
Determines if the property is functional because there is an axiom in one of the specified ontologies that assert this to be the case.  | 
 boolean | 
OWLObjectPropertyExpression.isInverseFunctional(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpression.isIrreflexive(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpression.isReflexive(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpression.isSymmetric(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpression.isTransitive(java.util.Set<OWLOntology> ontologies)
 | 
| Constructors in org.semanticweb.owl.model with parameters of type OWLOntology | |
|---|---|
AddAxiom(OWLOntology ont,
         OWLAxiom axiom)
 | 
|
OWLAxiomChange(OWLOntology ont,
               OWLAxiom axiom)
 | 
|
OWLOntologyChange(OWLOntology ont)
 | 
|
RemoveAxiom(OWLOntology ont,
            OWLAxiom axiom)
 | 
|
SetOntologyURI(OWLOntology ont,
               java.net.URI newURI)
Creates a set ontology URI change, which will set the URI of the ontology to the specified new URI.  | 
|
SpecificOntologyChangeBroadcastStrategy(OWLOntology ontology)
Constructs a change broadcast strategy which only causes changes that have been applied to the specific ontology to be broadcast.  | 
|
| Uses of OWLOntology in org.semanticweb.owl.modularity | 
|---|
| Methods in org.semanticweb.owl.modularity that return OWLOntology | |
|---|---|
 OWLOntology | 
OntologySegmenter.extractAsOntology(java.util.Set<OWLEntity> signature,
                  java.net.URI uri)
Returns an ontology that is a segment of the ontology associated with this segmenter.  | 
| Uses of OWLOntology in org.semanticweb.owl.profiles | 
|---|
| Methods in org.semanticweb.owl.profiles with parameters of type OWLOntology | |
|---|---|
 OWLProfileReport | 
OWLProfile.checkOntology(OWLOntology ontology,
              OWLOntologyManager manager)
Checks an ontology and its import closure to see if it is within this profile.  | 
 OWLProfileReport | 
OWLDLProfile.checkOntology(OWLOntology ontology,
              OWLOntologyManager manager)
 | 
 OWLProfileReport | 
OWL2Profile.checkOntology(OWLOntology ontology,
              OWLOntologyManager manager)
 | 
 OWLProfileReport | 
ELPlusPlusProfile.checkOntology(OWLOntology ontology,
              OWLOntologyManager manager)
 | 
| Uses of OWLOntology in org.semanticweb.owl.util | 
|---|
| Methods in org.semanticweb.owl.util that return OWLOntology | |
|---|---|
 OWLOntology | 
OWLOntologyMerger.createMergedOntology(OWLOntologyManager ontologyManager,
                     java.net.URI ontologyURI)
 | 
| Methods in org.semanticweb.owl.util that return types with arguments of type OWLOntology | |
|---|---|
 java.util.Set<OWLOntology> | 
ToldClassHierarchyReasoner.getLoadedOntologies()
 | 
 java.util.Set<OWLOntology> | 
OWLReasonerMediator.getLoadedOntologies()
 | 
 java.util.Map<OWLOntology,java.util.Set<O>> | 
ImportsStructureObjectSorter.getObjects()
Gets a map that maps ontologies to sets of associated objects.  | 
 java.util.Set<OWLOntology> | 
OWLOntologySingletonSetProvider.getOntologies()
 | 
 java.util.Set<OWLOntology> | 
OWLOntologyImportsClosureSetProvider.getOntologies()
 | 
| Methods in org.semanticweb.owl.util with parameters of type OWLOntology | |
|---|---|
 void | 
InferredOntologyGenerator.fillOntology(OWLOntologyManager manager,
             OWLOntology ontology)
Adds 'inferred axioms' to an ontology using the generators that have been registered with this InferredAxiomGenerator | 
 java.util.List<OWLOntologyChange> | 
OWLOntologyURIChanger.getChanges(OWLOntology ontology,
           java.net.URI newURI)
Changes the URI of the specified ontology to the new URI.  | 
 java.util.Set<O> | 
ImportsStructureObjectSorter.ObjectSelector.getObjects(OWLOntology ontology)
 | 
 java.util.Set<OWLEntity> | 
ImportsStructureEntitySorter.ReferencedEntitySelector.getObjects(OWLOntology ontology)
 | 
 boolean | 
OWLReasonerMediator.isConsistent(OWLOntology ontology)
 | 
 void | 
OWLObjectPropertyManager.setOntology(OWLOntology ontology)
 | 
 void | 
AbstractOWLOntologyStorer.storeOntology(OWLOntologyManager manager,
              OWLOntology ontology,
              OWLOntologyOutputTarget target,
              OWLOntologyFormat format)
 | 
 void | 
AbstractOWLOntologyStorer.storeOntology(OWLOntologyManager manager,
              OWLOntology ontology,
              java.net.URI physicalURI,
              OWLOntologyFormat ontologyFormat)
 | 
 void | 
SimpleRenderer.visit(OWLOntology ontology)
 | 
 O | 
OWLObjectVisitorExAdapter.visit(OWLOntology ontology)
 | 
 void | 
OWLObjectVisitorAdapter.visit(OWLOntology ontology)
 | 
 void | 
OWLObjectTypeIndexProvider.visit(OWLOntology ontology)
 | 
 void | 
OWLObjectDuplicator.visit(OWLOntology ontology)
 | 
 void | 
OWLObjectComponentCollector.visit(OWLOntology ontology)
 | 
 void | 
OWLEntityCollector.visit(OWLOntology ontology)
 | 
 void | 
HashCode.visit(OWLOntology ontology)
 | 
 void | 
DLExpressivityChecker.visit(OWLOntology ontology)
 | 
 O | 
DelegatingObjectVisitorEx.visit(OWLOntology ontology)
 | 
| Method parameters in org.semanticweb.owl.util with type arguments of type OWLOntology | |
|---|---|
static java.util.Collection<java.util.Set<OWLObjectPropertyExpression>> | 
OWLObjectPropertyManager.getEquivalentObjectProperties(java.util.Set<OWLOntology> ontologies)
 | 
 void | 
ToldClassHierarchyReasoner.loadOntologies(java.util.Set<OWLOntology> ontologies)
 | 
 void | 
OWLReasonerMediator.loadOntologies(java.util.Set<OWLOntology> ontologies)
 | 
static void | 
OWLObjectPropertyManager.tarjan(java.util.Set<OWLOntology> ontologies,
       OWLObjectPropertyExpression prop,
       int index,
       java.util.Stack<OWLObjectPropertyExpression> stack,
       java.util.Map<OWLObjectPropertyExpression,java.lang.Integer> indexMap,
       java.util.Map<OWLObjectPropertyExpression,java.lang.Integer> lowlinkMap,
       java.util.Set<java.util.Set<OWLObjectPropertyExpression>> result,
       java.util.Set<OWLObjectPropertyExpression> processed,
       java.util.Set<OWLObjectPropertyExpression> stackProps)
 | 
 void | 
ToldClassHierarchyReasoner.unloadOntologies(java.util.Set<OWLOntology> ontologies)
 | 
 void | 
OWLReasonerMediator.unloadOntologies(java.util.Set<OWLOntology> ontologies)
 | 
| Constructors in org.semanticweb.owl.util with parameters of type OWLOntology | |
|---|---|
ImportsStructureEntitySorter(OWLOntology ontology,
                             OWLOntologyManager manager)
 | 
|
ImportsStructureObjectSorter(OWLOntology ontology,
                             OWLOntologyManager manager,
                             ImportsStructureObjectSorter.ObjectSelector<O> objectSelector)
Creates a sorter for the specified ontology, whose imports closure is obtained with the specified manager, and for each ontology whose objects are selected using the specified object selector.  | 
|
OWLObjectPropertyManager(OWLOntologyManager manager,
                         OWLOntology ont)
 | 
|
OWLOntologyImportsClosureSetProvider(OWLOntologyManager manager,
                                     OWLOntology rootOntology)
Constructs an OWLOntologySetProvider which provides a set containing the imports
 closure of a given ontology. | 
|
OWLOntologySingletonSetProvider(OWLOntology ontology)
Constructs an OWLOntologySingletonSetProvider which provides a singleton
 set contain the specified ontology. | 
|
ShortForm2AnnotationGenerator(OWLOntologyManager ontologyManager,
                              OWLOntology ontology,
                              ShortFormProvider shortFormProvider,
                              java.net.URI annotationURI)
 | 
|
ShortForm2AnnotationGenerator(OWLOntologyManager ontologyManager,
                              OWLOntology ontology,
                              ShortFormProvider shortFormProvider,
                              java.net.URI annotationURI,
                              java.lang.String languageTag)
 | 
|
| Constructor parameters in org.semanticweb.owl.util with type arguments of type OWLOntology | |
|---|---|
BidirectionalShortFormProviderAdapter(OWLOntologyManager man,
                                      java.util.Set<OWLOntology> ontologies,
                                      ShortFormProvider shortFormProvider)
Creates a BidirectionalShortFormProvider that maps between the entities that are referenced in the specified ontologies and the shortforms of these entities.  | 
|
BidirectionalShortFormProviderAdapter(java.util.Set<OWLOntology> ontologies,
                                      ShortFormProvider shortFormProvider)
Creates a BidirectionalShortFormProvider that maps between the entities that are referenced in the specified ontologies and the shortforms of these entities.  | 
|
DLExpressivityChecker(java.util.Set<OWLOntology> ontologies)
 | 
|
OWLEntityRemover(OWLOntologyManager owlOntologyManager,
                 java.util.Set<OWLOntology> ontologies)
Creates an entity remover, which will remove entities (axioms referring to the entities from the specified ontologies).  | 
|
OWLEntityRenamer(OWLOntologyManager owlOntologyManager,
                 java.util.Set<OWLOntology> ontologies)
 | 
|
OWLEntityURIConverter(OWLOntologyManager manager,
                      java.util.Set<OWLOntology> ontologies,
                      OWLEntityURIConverterStrategy strategy)
Creates a converter that will convert the URIs of entities in the specified ontologies using the specified conversion strategy.  | 
|
OWLOntologyWalker(java.util.Set<OWLOntology> objects)
 | 
|
ReferencedEntitySetProvider(java.util.Set<OWLOntology> ontologies)
 | 
|
SimpleRootClassChecker(java.util.Set<OWLOntology> ontologies)
Creates a root class checker, which examines axioms contained in ontologies from the specified set in order to determine if a class is a syntactic subclass of owl:Thing  | 
|
| Uses of OWLOntology in uk.ac.manchester.cs.owl | 
|---|
| Classes in uk.ac.manchester.cs.owl that implement OWLOntology | |
|---|---|
 class | 
OWLOntologyImpl
Author: Matthew Horridge The University Of Manchester Bio-Health Informatics Group Date: 26-Oct-2006  | 
| Methods in uk.ac.manchester.cs.owl that return OWLOntology | |
|---|---|
 OWLOntology | 
OWLOntologyManagerImpl.createOntology(java.util.Set<OWLAxiom> axioms)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.createOntology(java.util.Set<OWLAxiom> axioms,
               java.net.URI ontologyURI)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI,
               java.util.Set<OWLOntology> ontologies)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI,
               java.util.Set<OWLOntology> ontologies,
               boolean copyLogicalAxiomsOnly)
 | 
 OWLOntology | 
ParsableOWLOntologyFactory.createOWLOntology(java.net.URI ontologyURI,
                  java.net.URI physicalURI)
Overriden - This method will throw an OWLException which wraps an UnsupportedOperationException.  | 
 OWLOntology | 
EmptyInMemOWLOntologyFactory.createOWLOntology(java.net.URI ontologyURI,
                  java.net.URI physicalURI,
                  OWLOntologyFactory.OWLOntologyCreationHandler handler)
 | 
 OWLOntology | 
AbstractInMemOWLOntologyFactory.createOWLOntology(java.net.URI ontologyURI,
                  java.net.URI physicalURI,
                  OWLOntologyFactory.OWLOntologyCreationHandler handler)
Creates an empty ontology that a concrete representation can be parsed into.  | 
 OWLOntology | 
OWLOntologyManagerImpl.getImportedOntology(OWLImportsDeclaration declaration)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.getOntology(java.net.URI ontologyURI)
 | 
 OWLOntology | 
OWLImportsDeclarationImpl.getSubject()
 | 
 OWLOntology | 
OWLOntologyManagerImpl.loadOntology(OWLOntologyInputSource inputSource)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.loadOntology(java.net.URI ontologyURI)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.loadOntologyFromPhysicalURI(java.net.URI uri)
 | 
 OWLOntology | 
ParsableOWLOntologyFactory.loadOWLOntology(OWLOntologyInputSource inputSource,
                OWLOntologyFactory.OWLOntologyCreationHandler mediator)
 | 
 OWLOntology | 
EmptyInMemOWLOntologyFactory.loadOWLOntology(OWLOntologyInputSource inputSource,
                OWLOntologyFactory.OWLOntologyCreationHandler mediator)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.reloadOntology(java.net.URI ontologyURI)
 | 
| Methods in uk.ac.manchester.cs.owl that return types with arguments of type OWLOntology | |
|---|---|
 java.util.Set<OWLOntology> | 
OWLOntologyManagerImpl.getImports(OWLOntology ontology)
 | 
 java.util.Set<OWLOntology> | 
OWLOntologyImpl.getImports(OWLOntologyManager ontologyManager)
 | 
 java.util.Set<OWLOntology> | 
OWLOntologyManagerImpl.getImportsClosure(OWLOntology ontology)
 | 
 java.util.Set<OWLOntology> | 
OWLOntologyManagerImpl.getOntologies()
 | 
 java.util.Set<OWLOntology> | 
OWLOntologyManagerImpl.getOntologies(OWLAxiom axiom)
 | 
 java.util.List<OWLOntology> | 
OWLOntologyManagerImpl.getSortedImportsClosure(OWLOntology ontology)
 | 
| Methods in uk.ac.manchester.cs.owl with parameters of type OWLOntology | |
|---|---|
 java.util.List<OWLOntologyChange> | 
OWLOntologyManagerImpl.addAxiom(OWLOntology ont,
         OWLAxiom axiom)
 | 
 java.util.List<OWLOntologyChange> | 
OWLOntologyManagerImpl.addAxioms(OWLOntology ont,
          java.util.Set<? extends OWLAxiom> axioms)
 | 
 boolean | 
OWLOntologyManagerImpl.contains(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotationAxiom> | 
OWLObjectPropertyImpl.getAnnotationAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotationAxiom> | 
OWLIndividualImpl.getAnnotationAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotationAxiom> | 
OWLDataTypeImpl.getAnnotationAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotationAxiom> | 
OWLDataPropertyImpl.getAnnotationAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotationAxiom> | 
OWLClassImpl.getAnnotationAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLAxiomAnnotationAxiom> | 
OWLAxiomImpl.getAnnotationAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLOntologyAnnotationAxiom> | 
OWLOntologyImpl.getAnnotations(OWLOntology ontology)
Gets the annotations whose subject is this ontology - i.e.  | 
 java.util.Set<OWLAnnotation> | 
OWLObjectPropertyImpl.getAnnotations(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotation> | 
OWLIndividualImpl.getAnnotations(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotation> | 
OWLDataTypeImpl.getAnnotations(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotation> | 
OWLDataPropertyImpl.getAnnotations(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotation> | 
OWLClassImpl.getAnnotations(OWLOntology ontology)
 | 
 java.util.Set<OWLAnnotation> | 
OWLObjectPropertyImpl.getAnnotations(OWLOntology ontology,
               java.net.URI annotationURI)
 | 
 java.util.Set<OWLAnnotation> | 
OWLIndividualImpl.getAnnotations(OWLOntology ontology,
               java.net.URI annotationURI)
 | 
 java.util.Set<OWLAnnotation> | 
OWLDataTypeImpl.getAnnotations(OWLOntology ontology,
               java.net.URI annotationURI)
 | 
 java.util.Set<OWLAnnotation> | 
OWLDataPropertyImpl.getAnnotations(OWLOntology ontology,
               java.net.URI annotationURI)
 | 
 java.util.Set<OWLAnnotation> | 
OWLClassImpl.getAnnotations(OWLOntology ontology,
               java.net.URI annotationURI)
 | 
 java.util.Map<OWLDataPropertyExpression,java.util.Set<OWLConstant>> | 
OWLIndividualImpl.getDataPropertyValues(OWLOntology ontology)
 | 
 java.util.Set<OWLIndividual> | 
OWLIndividualImpl.getDifferentIndividuals(OWLOntology ontology)
 | 
 java.util.Set<OWLDescription> | 
OWLClassImpl.getDisjointClasses(OWLOntology ontology)
 | 
 java.util.Set<OWLDisjointClassesAxiom> | 
OWLClassImpl.getDisjointClassesAxioms(OWLOntology ontology)
 | 
 java.util.Set<P> | 
OWLPropertyExpressionImpl.getDisjointProperties(OWLOntology ontology)
 | 
 java.util.Set<OWLDisjointUnionAxiom> | 
OWLClassImpl.getDisjointUnionAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLDescription> | 
OWLPropertyExpressionImpl.getDomains(OWLOntology ontology)
 | 
 java.util.Set<OWLEntityAnnotationAxiom> | 
OWLDeclarationAxiomImpl.getEntityAnnotations(OWLOntology ontology)
 | 
 java.util.Set<OWLDescription> | 
OWLClassImpl.getEquivalentClasses(OWLOntology ontology)
 | 
 java.util.Set<OWLEquivalentClassesAxiom> | 
OWLClassImpl.getEquivalentClassesAxioms(OWLOntology ontology)
 | 
 java.util.Set<P> | 
OWLPropertyExpressionImpl.getEquivalentProperties(OWLOntology ontology)
 | 
 java.util.Set<OWLOntology> | 
OWLOntologyManagerImpl.getImports(OWLOntology ontology)
 | 
 java.util.Set<OWLOntology> | 
OWLOntologyManagerImpl.getImportsClosure(OWLOntology ontology)
 | 
 java.util.Set<OWLDataPropertyAssertionAxiom> | 
OWLIndividualImpl.getIndividualDataRelationshipAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLNegativeDataPropertyAssertionAxiom> | 
OWLIndividualImpl.getIndividualNotDataRelationshipAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLNegativeObjectPropertyAssertionAxiom> | 
OWLIndividualImpl.getIndividualNotObjectRelationshipAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLObjectPropertyAssertionAxiom> | 
OWLIndividualImpl.getIndividualObjectRelationshipAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLIndividual> | 
OWLClassImpl.getIndividuals(OWLOntology ontology)
 | 
 java.util.Set<OWLClassAssertionAxiom> | 
OWLIndividualImpl.getIndividualTypeAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLObjectPropertyExpression> | 
OWLObjectPropertyExpressionImpl.getInverses(OWLOntology ontology)
 | 
 java.util.Map<OWLDataPropertyExpression,java.util.Set<OWLConstant>> | 
OWLIndividualImpl.getNegativeDataPropertyValues(OWLOntology ontology)
 | 
 java.util.Map<OWLObjectPropertyExpression,java.util.Set<OWLIndividual>> | 
OWLIndividualImpl.getNegativeObjectPropertyValues(OWLOntology ontology)
 | 
 java.util.Map<OWLProperty,java.util.Set<OWLObject>> | 
OWLIndividualImpl.getNPropertyValues(OWLOntology ontology)
 | 
 java.util.Map<OWLObjectPropertyExpression,java.util.Set<OWLIndividual>> | 
OWLIndividualImpl.getObjectPropertyValues(OWLOntology ontology)
 | 
 OWLOntologyFormat | 
OWLOntologyManagerImpl.getOntologyFormat(OWLOntology ontology)
 | 
 OWLImportsDeclaration | 
OWLDataFactoryImpl.getOWLImportsDeclarationAxiom(OWLOntology subject,
                              java.net.URI importedOntologyURI)
 | 
 OWLOntologyAnnotationAxiom | 
OWLDataFactoryImpl.getOWLOntologyAnnotationAxiom(OWLOntology subject,
                              OWLAnnotation annotation)
 | 
 java.net.URI | 
OWLOntologyManagerImpl.getPhysicalURIForOntology(OWLOntology ontology)
 | 
 java.util.Map<OWLProperty,java.util.Set<OWLObject>> | 
OWLIndividualImpl.getPropertyValues(OWLOntology ontology)
 | 
 java.util.Set<R> | 
OWLPropertyExpressionImpl.getRanges(OWLOntology ontology)
 | 
 java.util.Set<OWLIndividual> | 
OWLIndividualImpl.getSameIndividuals(OWLOntology ontology)
 | 
 java.util.List<OWLOntology> | 
OWLOntologyManagerImpl.getSortedImportsClosure(OWLOntology ontology)
 | 
 java.util.Set<OWLSubClassAxiom> | 
OWLClassImpl.getSubClassAxioms(OWLOntology ontology)
 | 
 java.util.Set<OWLDescription> | 
OWLClassImpl.getSubClasses(OWLOntology ontology)
 | 
 java.util.Set<P> | 
OWLPropertyExpressionImpl.getSubProperties(OWLOntology ontology)
 | 
 java.util.Set<OWLDescription> | 
OWLClassImpl.getSuperClasses(OWLOntology ontology)
 | 
 java.util.Set<P> | 
OWLPropertyExpressionImpl.getSuperProperties(OWLOntology ontology)
 | 
 java.util.Set<OWLDescription> | 
OWLIndividualImpl.getTypes(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isAntiSymmetric(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isAsymmetric(OWLOntology ontology)
 | 
 boolean | 
OWLClassImpl.isDefined(OWLOntology ontology)
Determines if this class has at least one equivalent class in the specified ontology.  | 
 boolean | 
OWLObjectPropertyExpressionImpl.isFunctional(OWLOntology ontology)
 | 
 boolean | 
OWLDataPropertyImpl.isFunctional(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isInverseFunctional(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isIrreflexive(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isReflexive(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isSymmetric(OWLOntology ontology)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isTransitive(OWLOntology ontology)
 | 
 void | 
OWLOntologyManagerImpl.ontologyCreated(OWLOntology ontology)
 | 
 void | 
OWLOntologyManagerImpl.saveOntology(OWLOntology ontology)
 | 
 void | 
OWLOntologyManagerImpl.saveOntology(OWLOntology ontology,
             OWLOntologyFormat ontologyFormat)
 | 
 void | 
OWLOntologyManagerImpl.saveOntology(OWLOntology ontology,
             OWLOntologyFormat ontologyFormat,
             OWLOntologyOutputTarget outputTarget)
 | 
 void | 
OWLOntologyManagerImpl.saveOntology(OWLOntology ontology,
             OWLOntologyFormat ontologyFormat,
             java.net.URI physcialURI)
 | 
 void | 
OWLOntologyManagerImpl.saveOntology(OWLOntology ontology,
             OWLOntologyOutputTarget outputTarget)
 | 
 void | 
OWLOntologyManagerImpl.saveOntology(OWLOntology ontology,
             java.net.URI physicalURI)
 | 
 void | 
OWLOntologyManagerImpl.setOntologyFormat(OWLOntology ontology,
                  OWLOntologyFormat format)
 | 
 void | 
OWLOntologyManagerImpl.setPhysicalURIForOntology(OWLOntology ontology,
                          java.net.URI physicalURI)
 | 
| Method parameters in uk.ac.manchester.cs.owl with type arguments of type OWLOntology | |
|---|---|
 OWLOntology | 
OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI,
               java.util.Set<OWLOntology> ontologies)
 | 
 OWLOntology | 
OWLOntologyManagerImpl.createOntology(java.net.URI ontologyURI,
               java.util.Set<OWLOntology> ontologies,
               boolean copyLogicalAxiomsOnly)
 | 
static java.util.Set<OWLAnnotationAxiom> | 
ImplUtils.getAnnotationAxioms(OWLEntity entity,
                    java.util.Set<OWLOntology> ontologies)
 | 
static java.util.Set<OWLAnnotation> | 
ImplUtils.getAnnotations(OWLEntity entity,
               java.util.Set<OWLOntology> ontologies)
 | 
static java.util.Set<OWLAnnotation> | 
ImplUtils.getAnnotations(OWLEntity entity,
               java.net.URI annotationURI,
               java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLDescription> | 
OWLClassImpl.getDisjointClasses(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<P> | 
OWLPropertyExpressionImpl.getDisjointProperties(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLDescription> | 
OWLPropertyExpressionImpl.getDomains(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLDescription> | 
OWLClassImpl.getEquivalentClasses(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<P> | 
OWLPropertyExpressionImpl.getEquivalentProperties(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLIndividual> | 
OWLClassImpl.getIndividuals(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLObjectPropertyExpression> | 
OWLObjectPropertyExpressionImpl.getInverses(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<R> | 
OWLPropertyExpressionImpl.getRanges(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLDescription> | 
OWLClassImpl.getSubClasses(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<P> | 
OWLPropertyExpressionImpl.getSubProperties(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLDescription> | 
OWLClassImpl.getSuperClasses(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<P> | 
OWLPropertyExpressionImpl.getSuperProperties(java.util.Set<OWLOntology> ontologies)
 | 
 java.util.Set<OWLDescription> | 
OWLIndividualImpl.getTypes(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isAntiSymmetric(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isAsymmetric(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLClassImpl.isDefined(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isFunctional(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLDataPropertyImpl.isFunctional(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isInverseFunctional(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isIrreflexive(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isReflexive(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isSymmetric(java.util.Set<OWLOntology> ontologies)
 | 
 boolean | 
OWLObjectPropertyExpressionImpl.isTransitive(java.util.Set<OWLOntology> ontologies)
 | 
| Constructors in uk.ac.manchester.cs.owl with parameters of type OWLOntology | |
|---|---|
OWLImportsDeclarationImpl(OWLDataFactory dataFactory,
                          OWLOntology subject,
                          java.net.URI importsURI)
 | 
|
OWLOntologyAnnotationAxiomImpl(OWLDataFactory dataFactory,
                               OWLOntology subject,
                               OWLAnnotation annotation)
 | 
|
| Uses of OWLOntology in uk.ac.manchester.cs.owl.dlsyntax | 
|---|
| Methods in uk.ac.manchester.cs.owl.dlsyntax with parameters of type OWLOntology | |
|---|---|
 void | 
DLSyntaxObjectRenderer.visit(OWLOntology ontology)
 | 
| Uses of OWLOntology in uk.ac.manchester.cs.owl.inference.dig11 | 
|---|
| Methods in uk.ac.manchester.cs.owl.inference.dig11 with parameters of type OWLOntology | |
|---|---|
 boolean | 
DIGReasoner.isConsistent(OWLOntology ontology)
 | 
 void | 
DIGRenderer.visit(OWLOntology ontology)
 | 
| Method parameters in uk.ac.manchester.cs.owl.inference.dig11 with type arguments of type OWLOntology | |
|---|---|
 void | 
DIGTranslatorImpl.translateToDIG(java.util.Set<OWLOntology> ontologies,
               org.w3c.dom.Document doc,
               org.w3c.dom.Element node)
 | 
 void | 
DIGTranslator.translateToDIG(java.util.Set<OWLOntology> ontologies,
               org.w3c.dom.Document doc,
               org.w3c.dom.Element node)
Translates a set of OWLOntology objects to DIG | 
| Uses of OWLOntology in uk.ac.manchester.cs.owl.mansyntaxrenderer | 
|---|
| Methods in uk.ac.manchester.cs.owl.mansyntaxrenderer with parameters of type OWLOntology | |
|---|---|
 void | 
ManchesterOWLSyntaxRenderer.render(OWLOntology ontology,
       java.io.Writer writer)
 | 
 void | 
ManchesterOWLSyntaxObjectRenderer.visit(OWLOntology ontology)
 | 
| Constructors in uk.ac.manchester.cs.owl.mansyntaxrenderer with parameters of type OWLOntology | |
|---|---|
ManchesterOWLSyntaxFrameRenderer(OWLOntologyManager owlOntologyManager,
                                 OWLOntology ontology,
                                 java.io.Writer writer)
 | 
|
| Uses of OWLOntology in uk.ac.manchester.cs.owl.modularity | 
|---|
| Methods in uk.ac.manchester.cs.owl.modularity that return OWLOntology | |
|---|---|
 OWLOntology | 
SyntacticLocalityModuleExtractor.extractAsOntology(java.util.Set<OWLEntity> signature,
                  java.net.URI uri)
Extracts a module from the associated ontology for a given signature and the associated module type, and returns the module as an ontology.  | 
| Constructors in uk.ac.manchester.cs.owl.modularity with parameters of type OWLOntology | |
|---|---|
SyntacticLocalityModuleExtractor(OWLOntologyManager man,
                                 OWLOntology ont,
                                 ModuleType moduleType)
Creates a new module extractor for a given ontology, its manager, and a specified type of locality.  | 
|
| Uses of OWLOntology in uk.ac.manchester.cs.owl.turtle.parser | 
|---|
| Methods in uk.ac.manchester.cs.owl.turtle.parser with parameters of type OWLOntology | |
|---|---|
 OWLOntologyFormat | 
TurtleOntologyParser.parse(OWLOntologyInputSource inputSource,
      OWLOntology ontology)
 | 
| Constructors in uk.ac.manchester.cs.owl.turtle.parser with parameters of type OWLOntology | |
|---|---|
OWLRDFConsumerAdapter(OWLOntologyManager owlOntologyManager,
                      OWLOntology ontology,
                      AnonymousNodeChecker checker)
 | 
|
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