Large BioMed Track (largebio)
This track consists of finding alignments between the
Foundational Model of Anatomy (FMA),
and the National Cancer Institute Thesaurus (NCI). These ontologies are semantically rich and
contain tens of thousands of classes.
UMLS Metathesaurus has been selected as the basis for the
track reference alignments.
UMLS is currently the most comprehensive effort for integrating independently-developed medical thesauri and ontologies,
including FMA, SNOMED CT, and NCI. The integration of new UMLS sources combines automatic techniques,
expert assessment, and auditing protocols.
Ernesto Jimenez-Ruiz, Asan Agibetov, Matthias Samwald, Valerie Cross.
Breaking-down the Ontology Alignment Task with a Lexical Index and Neural Embeddings. CoRR abs/1805.12402 (2018) [pdf]
- Ernesto Jimenez-Ruiz, Bernardo Cuenca Grau and Ian Horrocks.
Is my ontology matching system similar to yours?.
The 8th International Workshop on Ontology Matching.
- Ernesto Jimenez-Ruiz, Christian Meilicke, Bernardo Cuenca Grau and Ian Horrocks.
Evaluating Mapping Repair Systems with Large Biomedical Ontologies. In
26th International Workshop on Description Logics.
In Volume 1014 of CEUR-WS.org.
- Catia Pesquita, Daniel Faria, Emanuel Santos, Francisco M. Couto.
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments.
In OM 2013 workshop. [pdf].
- E. Jimenez-Ruiz, B. Cuenca Grau, I. Horrocks, and R. Berlanga.
of the compatibility of UMLS ontology sources. J Biomed. Sem. 2 (2011)
Results of the Ontology Alignment Evaluation Initiative 2018. In: Ontology Matching Workshop (2018).
Volume 2288 of CEUR-WS.org.
Results of the Ontology Alignment Evaluation Initiative 2017. In: Ontology Matching Workshop (2017).
Volume 2032 of CEUR-WS.org.
Results of the Ontology Alignment Evaluation Initiative 2016. In: Ontology Matching Workshop (2016).
Volume 1766 of CEUR-WS.org.
Results of the Ontology Alignment Evaluation Initiative 2015. In: Ontology Matching Workshop (2015).
Volume 1545 of CEUR-WS.org.
Results of the Ontology Alignment Evaluation Initiative 2014. In: Ontology Matching Workshop (2014).
Volume 1317 of CEUR-WS.org.
Results of the Ontology Alignment Evaluation Initiative 2013.
In: Ontology Matching Workshop (2013). Volume 1111 of CEUR-WS.org.
Results of the Ontology Alignment Evaluation Initiative 2012.
In: Ontology Matching Workshop (2012). Volume 946 of CEUR-WS.org.
This track is organized by Ernesto Jimenez Ruiz and
If you have any problems working with the ontologies or any suggestions
related to this track, feel free to write an email to ernesto [.] jimenez [.] ruiz [at] gmail [.] com
We would like to thank the participants and organisers of the OAEI campaigns, especially Christian Meilicke,
for their help in the setting up of this track.
We also thank Bernardo Cuenca Grau and
Ian Horrocks for their unvaluable help in past editions of this OAEI track.
The track is currently supported by the SIRIUS Centre for Research-driven Innovation and the AIDA project.
The track was also supported in the past by the SEALS,
LogMap and Optique projects.