Chaste: Developing software for realistic heart simulations : Publications

High−throughput functional curation of cellular electrophysiology models

Niederer S.A. Cooper J. Mirams G.R.

In Progress in Biophysics and Molecular Biology. Vol. 107. Pages 11 − 20. 2011.

Details | BibTeX | DOI (10.1016/j.pbiomolbio.2011.06.003)

Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk

G. R. Mirams‚ Y. Cui‚ A. Sher‚ M. Fink‚ J. Cooper‚ B. M. Heath‚ N. C. McMahon‚ D. J. Gavaghan and D. Noble

In Cardiovascular Research. Vol. 91. No. 1. Pages 53–61. 2011.

Details | BibTeX | DOI (10.1093/cvr/cvr044)

Chaste: A test−driven approach to software development for biological modelling

J. Pitt−Francis‚ P. Pathmanathan‚ M.O. Bernabeu‚ R. Bordas‚ J. Cooper‚ A.G. Fletcher‚ G.R. Mirams‚ P. Murray‚ J.M. Osborne‚ A. Walter‚ S.J. Chapman‚ A. Garny‚ I.M.M. van Leeuwen‚ P.K. Maini‚ B. Rodriguez‚ S.L. Waters‚ J.P. Whiteley‚ H.M. Byrne and D.J. Gavaghan

In Computer Physics Communications. Vol. 180. No. 12. Pages 2452−2471. 2009.

Details | BibTeX | DOI (10.1016/j.cpc.2009.07.019)

A computational study of discrete mechanical tissue models

P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman

In Physical Biology. Vol. 6. No. 3. 2009.

Details | BibTeX | DOI (10.1088/1478-3975/6/3/036001)

Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library

M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley

In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009.

Details | BibTeX | DOI (10.1098/rsta.2008.0309)

An integrative computational model for intestinal tissue renewal

HM Byrne IMM van Leeuwen GR Mirams A Walter A Fletcher P Murray J Osborne S Varma SJ Young J Cooper B Doyle J Pitt−Francis L Momtahan P Pathmanathan JP Whiteley SJ Chapman DJ Gavaghan OE Jensen JR King PK Maini SL Waters

In Cell Proliferation. Vol. 42. Pages 617−636. 2009.

Details | BibTeX | DOI (10.1111/j.1365-2184.2009.00627.x)

Chaste: Using Agile Programming Techniques to Develop Computational Biology Software

Joe Pitt−Francis‚ Miguel O. Bernabeu‚ Jonathan Cooper‚ Alan Garny‚ Lee Momtahan‚ James Osborne‚ Pras Pathmanathan‚ Blanca Rodriguez‚ Jonathan P. Whiteley and David J. Gavaghan

In Philosophical Transactions of the Royal Society A. Vol. 366. No. 1878. Pages 3111−3136. 2008.

Details | BibTeX | DOI (10.1098/rsta.2008.0096)