Jonathan Whiteley : Publications
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[1] |
Guide to Scientific Computing in C++ Joe Pitt−Francis and Jonathan Whiteley Springer. 2012. Details | BibTeX | DOI (10.1007/978-1-4471-2736-9) | LCCN (2012931858) | Link |
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[2] |
Multiple travelling wave solutions in a minimal model for cell motility J.M. Oliver L.S. Kimpton J.P. Whiteley S.L. Waters J.R. King In Mathematical Medicine and Biology. 2012. |
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[3] |
Heat or mass transfer from a sphere in Stokes flow at low Peclet number S.L. Waters C.G. Bell H.M. Byrne J.P. Whiteley In Applied Mathematics Letters. Vol. 26. Pages 392−396. 2012. |
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[4] |
Error bounds on block Gauss–Seidel solutions of coupled multiphysics problems S.J. Tavener J.P. Whiteley K. Gillow and A.C. Walter In International Journal for Numerical Methods in Engineering. Vol. 88. Pages 1219−1237. 2011. |
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[5] |
The significant effect of the choice of ionic current integration method in cardiac electrophysiological simulations P. Pathmanathan G.R. Mirams J.A. Southern and J.P. Whiteley In International Journal for Numerical Methods in Biomedical Engineering. Vol. 27. Pages 1751–1770. 2011. |
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[6] |
The Influence of Bioreactor Geometry and the Mechanical Environment on Engineered Tissues J. M. Osborne‚ R. D. O'Dea‚ J. P. Whiteley‚ H. M. Byrne and S. L. Waters In Journal of Biomechanical Engineering. Vol. 132. No. 5. Pages 051006. May, 2010. |
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[7] |
A numerical guide to the solution of the bidomain equations of cardiac electrophysiology P. Pathmanathan‚ M.O. Bernabeu‚ R. Bordas‚ J. Cooper‚ A. Garny‚ J. Pitt−Francis‚ J.P. Whiteley and D.J. Gavaghan In Progress in Biophysics and Molecular Biology. Vol. 102. No. (2−3). Pages 136−155. 2010. |
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[8] |
A numerical method for the multiphase viscous flow equations J.P. Whiteley J.M. Osborne In Computer Methods in Applied Mechanics and Engineering. Vol. 199. Pages 3402−3417. 2010. |
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[9] |
Non−local models for the formation of hepatocyte−stellate cell aggregates H.M. Byrne J.E.F. Green S.L. Waters J.P. Whiteley L. Edelstein−Keshet K.M. Shakesheff In Journal of Theoretical Biology. Vol. 267. Pages 106−120. 2010. |
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[10] |
Cardiac electromechanics: the effect of contraction model on the mathematical problem and accuracy of the numerical scheme J.P. Whiteley P. Pathmanathan S.J. Chapman D.J. Gavaghan In Quarterly Journal of Mechanics and Applied Mathematics. Vol. 63. No. 3. Pages 375−399. 2010. |
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[11] |
A posteriori error analysis for the use of lookup tables in cardiac electrophysiology simulations D.J. Gavaghan J. Cooper J.P. Whiteley In SIAM Journal on Scientific Computing. Vol. 32. No. 4. Pages 2167−2189. 2010. |
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[12] |
Modeling alveolar volume changes during periodic breathing in heterogeneously ventilated lungs J.P. Whiteley S.−J. Dunn In Annals of Biomedical Engineering. Vol. 38. No. 9. Pages 2988−2999. 2010. |
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[13] |
Model reduction using a posteriori analysis J.P. Whiteley In Mathematical Biosciences. Vol. 225. Pages 44−52. 2010. |
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[14] |
Computational and Numerical Methods for the Accurate and Efficient Solution of the Bidomain Equations J.P. Whiteley In Mathematics In Industry. Vol. 15. Pages 377−382. 2010. |
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[15] |
A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems SJ Chapman P Pathmanathan JP Whiteley and DJ Gavaghan In Journal of Applied Mechanics. Vol. 77. Pages 034501. 2010. |
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[16] |
Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009. |
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[17] |
Chaste: a test−driven approach to software development for biological modelling D.J. Gavaghan J. Pitt−Francis P. Pathmanathan M.O. Bernabeu R. Bordas J. Cooper A.G. Fletcher G.R. Mirams P. Murray J.M. Osborne A. Walter S.J. Chapman A. Garny I.M.M. van Leeuwen P.K. Maini B. Rodriguez S.L. Waters J.P. Whiteley H.M. Byrne In Computer Physics Communications. Vol. 180. No. 12. Pages 2452–2471. 2009. |
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[18] |
Solving the Coupled System Improves Computational Efficiency of the Bidomain Equations J.P. Whiteley J.A. Southern G. Plank E.J. Vigmond In IEEE Transactions on Biomedical Engineering. Vol. 56. No. 10. Pages 2404−2412. 2009. |
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[19] |
A Comparison of Numerical Methods used for Finite Element Modelling of Soft Tissue Deformation J.P. Whiteley P. Pathmanathan D.J. Gavaghan In Journal of Strain Analysis. Vol. 44. Pages 391−406. 2009. |
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[20] |
Discontinuous Galerkin Finite Element Methods for Incompressible Non−linear Elasticity J.P. Whiteley In Computer Methods in Applied Mechanics and Engineering. Vol. 198. Pages 3464−3478. 2009. |
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[21] |
A Numerical Method for Cardiac Mechanoelectric Simulations P. Pathmanathan and J.P. Whiteley In Annals of Biomedical Engineering. Vol. 37(5). Pages 860−873. 2009. |
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[22] |
An integrative computational model for intestinal tissue renewal HM Byrne IMM van Leeuwen GR Mirams A Walter A Fletcher P Murray J Osborne S Varma SJ Young J Cooper B Doyle J Pitt−Francis L Momtahan P Pathmanathan JP Whiteley SJ Chapman DJ Gavaghan OE Jensen JR King PK Maini SL Waters In Cell Proliferation. Vol. 42. Pages 617−636. 2009. |
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[23] |
An Efficient Technique for the Numerical Solution of the Bidomain equations J.P. Whiteley In Annals of Biomedical Engineering. Vol. 36. No. 8. Pages 1398−1408. 2008. |
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[24] |
Chaste: using agile programming techniques to develop computational biology software J. Pitt−Francis‚ M.O. Bernabeu‚ J. Cooper‚ A. Garny‚ L. Momtahan‚ J. Osborne‚ P. Pathmanathan‚ B. Rodriguez‚ J.P. Whiteley and D.J. Gavaghan In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 366. No. 1878. Pages 3111–3136. 2008. |
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[25] |
Predicting tumor location by modeling the deformation of the breast SJ Chapman P Pathmanathan DJ Gavaghan JP Whiteley and JM Brady In IEEE Transactions on Biomedical Engineering. Vol. 55(10). Pages 2471−2480. 2008. |
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[26] |
Multi−scale computational modelling in biology and physiology D.J. Gavaghan J.A. Southern J.M. Pitt−Francis J.P. Whiteley D. Stokeley H. Kobashi R. Nobes Y. Kadooka In Progress in Biophysics and Molecular Biology. Vol. 96. Pages 60−89. 2008. |
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[27] |
Non–linear modelling of breast tissue J.P. Whiteley‚ D.J. Gavaghan‚ S.J. Chapman and J.M. Brady In Mathematical Medicine and Biology. Vol. 24. Pages 327–345. 2007. |
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[28] |
Soft tissue modelling of cardiac fibres for use in coupled mechano–electric simulations J.P. Whiteley‚ M.J. Bishop and D.J. Gavaghan In Bulletin of Mathematical Biology. Vol. 69. Pages 2199–2225. 2007. |
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[29] |
Physiology driven adaptivity for the numerical solution of the bidomain equations J.P. Whiteley In Annals of Biomedical Engineering. Vol. 35. Pages 1510–1520. 2007. |
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[30] |
Synchronization between arterial blood pressure and cerebral oxyhaemoglobin concentration investigated by wavelet cross–correlation A.B. Rowley‚ S.J. Payne‚ I. Tachtsidis‚ M.J. Ebden‚ J.P. Whiteley‚ D.J. Gavaghan‚ L. Tarassenko‚ M. Smith‚ C.E. Elwell and D.T. Delpy In Physiological Measurement. Vol. 28. Pages 161–173. 2007. |
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[31] |
An efficient numerical technique for the solution of the monodomain and bidomain equations J.P. Whiteley In IEEE Transactions on Biomedical Engineering. Vol. 53. Pages 2139–2147. 2006. |
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[32] |
Some factors affecting pulmonary oxygen transport J.P. Whiteley In Mathematical Biosciences. Vol. 202. Pages 115–132. 2006. |
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[33] |
Synthesis of voltage–sensitive optical signals: application to panoramic optical mapping M.J. Bishop‚ B. Rodriguez‚ J. Eason‚ J.P. Whiteley‚ N.A. Trayanova and D.J. Gavaghan In Biophysical Journal. Vol. 90. Pages 2938–2945. 2006. |
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[34] |
Oxygen transport to muscle tissue where regions of low oxygen tension exist J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Mathematical and Computer Modelling. Vol. 42. Pages 1113–1122. 2005. |
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[35] |
The solution of inverse non–linear elasticity problems that arise when locating breast tumours J.P. Whiteley In Journal of Theoretical Medicine. Vol. 6. Pages 143–149. 2005. |
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[36] |
Predicting tumour location by simulating large deformations of the breast using a 3D finite element model and nonlinear elasticity P. Pathmanathan‚ D.J. Gavaghan‚ J.P. Whiteley‚ J.M. Brady‚ M.P. Nash‚ P.F. Nielsen and V. Rajagopal In Proceedings of MICCAI 2004. Vol. 3217 of Lecture Notes in Computer Science. Pages 217–224. 2004. |
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[37] |
Periodic breathing induced by arterial oxygen partial pressure oscillations J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Mathematical Medicine and Biology. Vol. 20. Pages 205–224. 2003. |
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[38] |
Mathematical modelling of pulmonary gas transport J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Journal of Mathematical Biology. Vol. 47. Pages 79–99. 2003. |
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[39] |
The effect of diffusion in the respiratory tree on the alveolar amplitude response technique (AART) J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Respiratory Physiology & Neurobiology. Vol. 137. Pages 81–96. 2003. |
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[40] |
Efficient computations of gas transport in the respiratory tree J.P. Whiteley and D.J. Gavaghan In Mathematical Medicine and Biology. Vol. 20. Pages 91–104. 2003. |
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[41] |
A tidal ventilation model for oxygenation in respiratory failure J.P. Whiteley‚ A.D. Farmery‚ D.J. Gavaghan and C.E.W. Hahn In Respiratory Physiology & Neurobiology. Vol. 136. Pages 77–88. 2003. |
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[42] |
The effects of ventilation pattern on carbon dioxide transfer in three computer models of the airways J.P. Whiteley‚ M.J. Turner‚ A.B. Baker‚ D.J. Gavaghan and C.E.W. Hahn In Respiratory Physiology & Neurobiology. Vol. 131. Pages 269–284. 2002. |
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[43] |
Mathematical modelling of oxygen transport to tissue J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Journal of Mathematical Biology. Vol. 44. Pages 503–522. 2002. |
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[44] |
Variation of venous admixture‚ SF6 shunt‚ PaO2‚ and the PaO2/FIO2 ratio with FIO2 J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In British Journal of Anaesthesia. Vol. 88. Pages 771–778. 2002. |
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[45] |
Some factors affecting oxygen uptake by red blood cells in the pulmonary capillaries J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Mathematical Biosciences. Vol. 169. Pages 153–172. 2001. |
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[46] |
Modelling inert gas exchange in tissue and mixed–venous blood return to the lungs J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Journal of Theoretical Biology. Vol. 209. Pages 431–443. 2001. |
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[47] |
A mathematical model of electron transfer within the mitochondrial respiratory cytochromes A.D. Farmery and J.P. Whiteley In Journal of Theoretical Biology. Vol. 213. Pages 197–207. 2001. |
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[48] |
A tidal breathing model of the inert gas sinewave technique for inhomogeneous lungs J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Respiration Physiology. Vol. 124. Pages 65–83. 2000. |
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[49] |
The effect of inspired oxygen concentration on the ventilation–perfusion distribution in inhomogeneous lungs J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Journal of Theoretical Biology. Vol. 204. Pages 575–585. 2000. |
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[50] |
Discovering the structure of partial differential equations from example behavior L. Todorovski‚ S. Dzeroski‚ A. Srinivasan‚ J.P. Whiteley and D.J. Gavaghan In Proceedings of the International Conference on Machine Learning‚ Stanford‚ USA. Pages 991–998. 2000. |
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[51] |
The effect of the width of the ventilation–perfusion distribution on arterial blood oxygen content J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Journal of Theoretical Biology. Vol. 201. Pages 271–279. 1999. |
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[52] |
A tidal breathing model for the multiple inert gas elimination technique J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Journal of Applied Physiology. Vol. 87. Pages 161–169. 1999. |
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[53] |
Pulmonary blood flow measured by inspiratory inert gas concentration forcing oscillations E.M. Williams‚ M.C. Sainsbury‚ L. Sutton‚ L. Xiong‚ A.M.S. Black‚ J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Respiration Physiology. Vol. 113. Pages 47–56. 1998. |
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[54] |
A mathematical evaluation of the multiple breath nitrogen washout (MBNW) technique and the multiple inert gas elimination technique (MIGET) J.P. Whiteley‚ D.J. Gavaghan and C.E.W. Hahn In Journal of Theoretical Biology. Vol. 194. Pages 517–539. 1998. |
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