Pras Pathmanathan : Publications
Journal papers
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[1] |
An integrative computational model for intestinal tissue renewal HM Byrne IMM van Leeuwen GR Mirams A Walter A Fletcher P Murray J Osborne S Varma SJ Young J Cooper B Doyle J Pitt−Francis L Momtahan P Pathmanathan JP Whiteley SJ Chapman DJ Gavaghan OE Jensen JR King PK Maini SL Waters In Cell Proliferation. Vol. 42. Pages 617−636. 2009. |
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[2] |
Chaste: A test−driven approach to software development for biological modelling J. Pitt−Francis‚ P. Pathmanathan‚ M.O. Bernabeu‚ R. Bordas‚ J. Cooper‚ A.G. Fletcher‚ G.R. Mirams‚ P. Murray‚ J.M. Osborne‚ A. Walter‚ S.J. Chapman‚ A. Garny‚ I.M.M. van Leeuwen‚ P.K. Maini‚ B. Rodriguez‚ S.L. Waters‚ J.P. Whiteley‚ H.M. Byrne and D.J. Gavaghan In Computer Physics Communications. Vol. 180. No. 12. Pages 2452−2471. 2009. |
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[3] |
Inverse membrane problems in elasticity P. Pathmanathan‚ SJ Chapman and DJ Gavaghan In QUARTERLY JOURNAL OF MECHANICS AND APPLIED MATHEMATICS . Vol. 62. No. 1. Pages 67–87. February, 2009. |
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[4] |
A hybrid approach to multi−scale modelling of cancer J. M. Osborne‚ A. Walter‚ S. K. Kershaw‚ G. R. Mirams‚ A. G. Fletcher‚ P. Pathmanathan‚ D. Gavaghan‚ O. E. Jensen‚ P. K. Maini and H. M. Byrne In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 368. No. 1930. Pages 5013–5028. November, 2010. |
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[5] |
The significant effect of the choice of ionic current integration method in cardiac electrophysiological simulations P. Pathmanathan G.R. Mirams J.A. Southern and J.P. Whiteley In International Journal for Numerical Methods in Biomedical Engineering. Vol. 27. Pages 1751–1770. 2011. |
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[6] |
A numerical guide to the solution of the bidomain equations of cardiac electrophysiology P. Pathmanathan‚ M.O. Bernabeu‚ R. Bordas‚ J. Cooper‚ A. Garny‚ J. Pitt−Francis‚ J.P. Whiteley and D.J. Gavaghan In Progress in Biophysics and Molecular Biology. Vol. 102. No. (2−3). Pages 136−155. 2010. |
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[7] |
Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations D. Kay M. Bernabeu P. Pathmanathan J. Pitt−Francis In Transactions of Biomedical Engineering (in press). 2010. |
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[8] |
Cardiac electromechanics: the effect of contraction model on the mathematical problem and accuracy of the numerical scheme JP Whiteley P Pathmanathan SJ Chapman DJ Gavaghan In Quarterly Journal of Mechanics and Applied Mathematics. Vol. 3. Pages 375−399. 2010. |
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[9] |
A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems SJ Chapman P Pathmanathan JP Whiteley and DJ Gavaghan In Journal of Applied Mechanics. Vol. 77. Pages 034501. 2010. |
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[10] |
Chaste: Using Agile Programming Techniques to Develop Computational Biology Software Joe Pitt−Francis‚ Miguel O. Bernabeu‚ Jonathan Cooper‚ Alan Garny‚ Lee Momtahan‚ James Osborne‚ Pras Pathmanathan‚ Blanca Rodriguez‚ Jonathan P. Whiteley and David J. Gavaghan In Philosophical Transactions of the Royal Society A. Vol. 366. No. 1878. Pages 3111−3136. 2008. |
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[11] |
A comparison of numerical methods used for finite element modelling of soft tissue deformation DJ Gavaghan P Pathmanathan and JP Whiteley In The Journal of Strain Analysis for Engineering Design. Vol. 44(5). Pages 391−406. 2009. |
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[12] |
Predicting tumor location by modeling the deformation of the breast SJ Chapman P Pathmanathan DJ Gavaghan JP Whiteley and JM Brady In IEEE Transactions on Biomedical Engineering. Vol. 55(10). Pages 2471−2480. 2008. |
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[13] |
A Numerical Method for Cardiac Mechanoelectric Simulations P. Pathmanathan and J.P. Whiteley In Annals of Biomedical Engineering. Vol. 37(5). Pages 860−873. 2009. |
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[14] |
A computational study of discrete mechanical tissue models P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman In Physical Biology. Vol. 6. No. 3. 2009. |
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[15] |
Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009. |
Conference papers
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[1] |
Predicting tumour location by simulating large deformations of the breast using a 3D finite element model and nonlinear elasticity P. Pathmanathan‚ D.J. Gavaghan‚ J.P. Whiteley‚ J.M. Brady‚ M.P. Nash‚ P.F. Nielsen and V. Rajagopal In Proceedings of MICCAI 2004. Vol. 3217 of Lecture Notes in Computer Science. Pages 217–224. 2004. |