Pras Pathmanathan : Publications

Journal papers

• [1]

  White Paper: Uncertainty and variability in computational and mathematical models of cardiac physiology

  GR Mirams‚ P Pathmanathan‚ RA Gray‚ P Challenor and RH Clayton

  In Journal of Physiology. 2016.

  Details about White Paper: Uncertainty and variability in computational and mathematical models of cardiac physiology | BibTeX data for White Paper: Uncertainty and variability in computational and mathematical models of cardiac physiology | DOI (10.1113/JP271671)

• [2]

  Uncertainty and variability in models of the cardiac action potential: can we build trustworthy models?

  RH Johnstone‚ ET Chang‚ R Bardenet‚ TP de Boer‚ DJ Gavaghan‚ P Pathmanathan‚ RH Clayton and GR Mirams

  In Journal of Molecular and Cellular Cardiology. Vol. 96. Pages 49−62. 2016.

  Details about Uncertainty and variability in models of the cardiac action potential: can we build trustworthy models? | BibTeX data for Uncertainty and variability in models of the cardiac action potential: can we build trustworthy models? | DOI (10.1016/j.yjmcc.2015.11.018)

• [3]

  Chaste: an open source C++ library for computational physiology and biology

  Gary R Mirams‚ Christopher J Arthurs‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alberto Corrias‚ Yohan Davit‚ Sara−Jane Dunn‚ Alexander G Fletcher‚ Daniel G Harvey and others

  In PLoS computational biology. Vol. 9. No. 3. Pages e1002970. 2013.

  Details about Chaste: an open source C++ library for computational physiology and biology | BibTeX data for Chaste: an open source C++ library for computational physiology and biology | DOI (10.1371/journal.pcbi.1002970)

• [4]

  Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials

  N Zemzemi‚ MO Bernabeu‚ J Saiz‚ J Cooper‚ P Pathmanathan‚ GR Mirams‚ J Pitt−Francis and B Rodriguez

  In British Journal of Pharmacology. Vol. 168. No. 3. Pages 718−733. 2013.

  Details about Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | BibTeX data for Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | DOI (10.1111/j.1476-5381.2012.02200.x)

• [5]

  Computational modelling of cardiac electro−physiology: explanation of the variability of results from different numerical solvers

  P. Pathmanathan‚ M. Bernabeu‚ S. Niederer‚ D. Gavaghan and D. Kay

  In Int. J. Numerical Methods in Biomedical Engineering. Vol. 28. No. 8. Pages 890−903. 2012.

  Details about Computational modelling of cardiac electro−physiology: explanation of the variability of results from different numerical solvers | BibTeX data for Computational modelling of cardiac electro−physiology: explanation of the variability of results from different numerical solvers | DOI (10.1002/cnm.2467)

• [6]

  The significant effect of the choice of ionic current integration method in cardiac electrophysiological simulations

  P. Pathmanathan G.R. Mirams J.A. Southern and J.P. Whiteley

  In International Journal for Numerical Methods in Biomedical Engineering. Vol. 27. Pages 1751–1770. 2011.

  Details about The significant effect of the choice of ionic current integration method in cardiac electrophysiological simulations | BibTeX data for The significant effect of the choice of ionic current integration method in cardiac electrophysiological simulations | DOI (10.1002/cnm.1438)

• [7]

  A hybrid approach to multi−scale modelling of cancer

  J. M. Osborne‚ A. Walter‚ S. K. Kershaw‚ G. R. Mirams‚ A. G. Fletcher‚ P. Pathmanathan‚ D. Gavaghan‚ O. E. Jensen‚ P. K. Maini and H. M. Byrne

  In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 368. No. 1930. Pages 5013–5028. November, 2010.

  Details about A hybrid approach to multi−scale modelling of cancer | BibTeX data for A hybrid approach to multi−scale modelling of cancer | DOI (10.1098/rsta.2010.0173)

• [8]

  A numerical guide to the solution of the bidomain equations of cardiac electrophysiology

  Pras Pathmanathan‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alan Garny‚ Joe M Pitt−Francis‚ Jonathan P Whiteley and David J Gavaghan

  In Progress in biophysics and molecular biology. Vol. 102. No. 2−3. Pages 136–155. 2010.

  Details about A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | BibTeX data for A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | DOI (10.1016/j.pbiomolbio.2010.05.006)

• [9]

  Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations

  D. Kay M. Bernabeu P. Pathmanathan J. Pitt−Francis

  In Transactions of Biomedical Engineering. Vol. 57. No. 12. Pages 2806−15. 2010.

  Details about Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | BibTeX data for Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | DOI (10.1109/TBME.2010.2078817)

• [10]

  Cardiac electromechanics: the effect of contraction model on the mathematical problem and accuracy of the numerical scheme

  JP Whiteley P Pathmanathan SJ Chapman DJ Gavaghan

  In Quarterly Journal of Mechanics and Applied Mathematics. Vol. 3. Pages 375−399. 2010.

  Details about Cardiac electromechanics: the effect of contraction model on the mathematical problem and accuracy of the numerical scheme | BibTeX data for Cardiac electromechanics: the effect of contraction model on the mathematical problem and accuracy of the numerical scheme

• [11]

  A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems

  P. Pathmanathan‚ J.P. Whiteley‚ S.J. Chapman and D.J. Gavaghan

  In Journal of Applied Mechanics. Vol. 77. Pages 034501. 2010.

  Details about A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems | BibTeX data for A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems | DOI (10.1115/1.4000414)

• [12]

  An integrative computational model for intestinal tissue renewal

  Van Leeuwen‚ Ingeborg MM‚ GR Mirams‚ Alex Walter‚ A Fletcher‚ P Murray‚ J Osborne‚ S Varma‚ SJ Young‚ J Cooper‚ B Doyle and others

  In Cell proliferation. Vol. 42. No. 5. Pages 617–636. 2009.

  Details about An integrative computational model for intestinal tissue renewal | BibTeX data for An integrative computational model for intestinal tissue renewal | DOI (10.1111/j.1365-2184.2009.00627.x)

• [13]

  Chaste: a test−driven approach to software development for biological modelling

  Joe Pitt−Francis‚ Pras Pathmanathan‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alexander G Fletcher‚ Gary R Mirams‚ Philip Murray‚ James M Osborne‚ Alex Walter and others

  In Computer Physics Communications. Vol. 180. No. 12. Pages 2452–2471. 2009.

  Details about Chaste: a test−driven approach to software development for biological modelling | BibTeX data for Chaste: a test−driven approach to software development for biological modelling | DOI (10.1016/j.cpc.2009.07.019)

• [14]

  Inverse membrane problems in elasticity

  P. Pathmanathan‚ SJ Chapman and DJ Gavaghan

  In QUARTERLY JOURNAL OF MECHANICS AND APPLIED MATHEMATICS    . Vol. 62. No. 1. Pages 67–87. February, 2009.

  Details about Inverse membrane problems in elasticity | BibTeX data for Inverse membrane problems in elasticity | DOI (10.1093/qjmam/hbn026) | Link to Inverse membrane problems in elasticity

• [15]

  A comparison of numerical methods used for finite element modelling of soft tissue deformation

  DJ Gavaghan P Pathmanathan and JP Whiteley

  In The Journal of Strain Analysis for Engineering Design. Vol. 44(5). Pages 391−406. 2009.

  Details about A comparison of numerical methods used for finite element modelling of soft tissue deformation | BibTeX data for A comparison of numerical methods used for finite element modelling of soft tissue deformation

• [16]

  A Numerical Method for Cardiac Mechanoelectric Simulations

  P. Pathmanathan and J.P. Whiteley

  In Annals of Biomedical Engineering. Vol. 37(5). Pages 860−873. 2009.

  Details about A Numerical Method for Cardiac Mechanoelectric Simulations | BibTeX data for A Numerical Method for Cardiac Mechanoelectric Simulations | DOI (10.1007/s10439-009-9663-8)

• [17]

  A computational study of discrete mechanical tissue models

  P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman

  In Physical Biology. Vol. 6. No. 3. 2009.

  Details about A computational study of discrete mechanical tissue models | BibTeX data for A computational study of discrete mechanical tissue models | DOI (10.1088/1478-3975/6/3/036001)

• [18]

  Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library

  M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley

  In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009.

  Details about Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | BibTeX data for Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | DOI (10.1098/rsta.2008.0309)

• [19]

  Chaste: using agile programming techniques to develop computational biology software

  Joe Pitt−Francis‚ Miguel O Bernabeu‚ Jonathan Cooper‚ Alan Garny‚ Lee Momtahan‚ James Osborne‚ Pras Pathmanathan‚ Blanca Rodriguez‚ Jonathan P Whiteley and David J Gavaghan

  In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 366. No. 1878. Pages 3111–3136. 2008.

  Details about Chaste: using agile programming techniques to develop computational biology software | BibTeX data for Chaste: using agile programming techniques to develop computational biology software | DOI (10.1098/rsta.2008.0096)

• [20]

  Predicting tumor location by modeling the deformation of the breast

  P. Pathmanathan‚ D.J. Gavaghan‚ J.P. Whiteley‚ S.J. Chapman and J.M. Brady

  In IEEE Transactions on Biomedical Engineering. Vol. 55(10). Pages 2471−2480. 2008.

  Details about Predicting tumor location by modeling the deformation of the breast | BibTeX data for Predicting tumor location by modeling the deformation of the breast | DOI (10.1109/TBME.2008.925714)

Conference papers

• [1]

  Predicting tumour location by simulating large deformations of the breast using a 3D finite element model and nonlinear elasticity

  P. Pathmanathan‚ D.J. Gavaghan‚ J.P. Whiteley‚ J.M. Brady‚ M.P. Nash‚ P.F. Nielsen and V. Rajagopal

  In Proceedings of MICCAI 2004. Vol. 3217 of Lecture Notes in Computer Science. Pages 217–224. 2004.

  Details about Predicting tumour location by simulating large deformations of the breast using a 3D finite element model and nonlinear elasticity | BibTeX data for Predicting tumour location by simulating large deformations of the breast using a 3D finite element model and nonlinear elasticity