Mandeep Gill
Interests
I work within the Computational Biology group and am primarily interested in the use of DSLs to describe biological systems and their design for biological modellers without a programming/computational background. My work focuses on the creation of DSLs to describe cardiac electro-physiological systems from a hybrid-stochastic point of view that may then be used to derive high-performance specialised simulations for execution on heterogeneous, parallel CPU and GPU systems.
This work has resutled in the creation of the Ode DSL - an open-source modelling language for describing spatially-homogenous systems containing ODEs, SDEs, and/or SSA-reactions. Ode and the accompying D.Phil thesis may be downloaded from https://bitbucket.org/mands/ode.
Selected Publications
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Model Composition for Biological Mathematical Systems
M. Gill‚ S. McKeever and D.J. Gavaghan
In International Conference on Model−Driven Engineering and Software Development (Modelsward 2014). 2014.
Details about Model Composition for Biological Mathematical Systems | BibTeX data for Model Composition for Biological Mathematical Systems
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Abstraction in physiological modelling languages
S. McKeever‚ M. Gill‚ A.J. Connor and D. Johnson
In Symposium on Theory of Modeling & Simulation (TMS'13). 2013.
Details about Abstraction in physiological modelling languages | BibTeX data for Abstraction in physiological modelling languages
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Modules for Reusable and Collaborative Modelling of Biological Mathematical Systems
M. Gill‚ S. McKeever and D.J. Gavaghan
In 21ST IEEE International WETICE Conference (WETICE−2012). 2012.
Details about Modules for Reusable and Collaborative Modelling of Biological Mathematical Systems | BibTeX data for Modules for Reusable and Collaborative Modelling of Biological Mathematical Systems