Publications a repository of the papers which used MOSAICS.
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Hierarchical natural move Monte Carlo refines flexible RNA structures into cryo-EM densities
Jeng-Yih Chang, Zhicheng Cui, Kailu Yang, Jianhua Huang, Peter Minary, Junjie Zhang
RNA, 26(12):1755-1766 (2020)
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HLA-DM Stabilizes the Empty MHCII Binding Groove: A Model Using Customized Natural Move Monte Carlo
Samuel Demharter, Bernard Knapp, Charlotte M. Deane, Peter Minary
Journal of Chemical Information and Modeling, 59(6):2894-2899 (2019)
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In silico structural modeling of multiple epigenetic marks on DNA
Konrad Krawczyk, Samuel Demharter, Bernhard Knapp, Charlotte M. Deane, Peter Minary
Bioinformatics, 34(1): 41-48 (2018)
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Tertiary Element Interaction in HIV-1 TAR
Konrad Krawczyk, Adelene Y. L. Sim, Bernhard Knapp, Charlotte M. Deane, Peter Minary
Journal of Chemical Information and Modeling, 56: 1748-1754 (2016)
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Modeling Functional Motions of Biological Systems by Customized Natural Moves
Samuel Demharter, Bernhard Knapp, Charlotte M. Deane, Peter Minary
Biophysical Journal, 111: 710-721 (2016)
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Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo
Bernhard Knapp, Samuel Demharter, Charlotte M. Deane, Peter Minary
Bioinformatics, 32(2): 181-186 (2016)
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Tuning cytokine receptor signaling by remodeling dimer architecture with surrogate ligands
Ignacio, M., Wering, G., Wilmes, S., Gryshkova, V., Hong, W. J., Sinha, R., Guo, F., Fabionar, H., Wehrman, T. S., Krutzik, P., Demharter, S., Plo, I., Miersch, S., Weissman, I. L., Sidhu, S., Minary, P., Mateji, R., Constantinescu, S. N., Piehler, J., Garcia, K. C.
Cell, 160: 1196-1208 (2015)
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Training-free atomistic prediction of nucleosome occupancy
Peter Minary, Michael Levitt
PNAS, 111: 6293-6298 (2014)
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Multiscale natural moves refine macromolecules using single-particle electron microscopy projection images
Junjie Zhang, Peter Minary, Michael Levitt
PNAS, 109: 9845-9850 (2012)
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Modeling and Design by Hierarchical Natural Moves
Adelene YL SIM, Michael Levitt, Peter Minary
PNAS, 109: 2890-2895 (2012)
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Modeling Nucleic Acids
Adelene YL SIM, Peter Minary, Michael Levitt
Current Opinion in Structural Biology, 22: 273-278 (2012)
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Conformational optimization with natural degrees of freedom: A novel chain breakage/closure algorithm
Peter Minary, Michael Levitt
Journal of Computational Biology, 17: 993-1010 (2012)
Abstract