James Osborne : Publications
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[1] |
On−Lattice Agent−based Simulation of Populations of Cells within the Open−Source Chaste Framework. Figueredo G.P. Joshi T.V. Osborne J.M. Helen M. Byrne H.M. and M.R. Owen In Interface Focus. Vol. 3(2). 2013. |
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[2] |
Hydrodynamic dispersion within porous biofilms Y. Davit‚ H.M. Byrne‚ J.M. Osborne‚ J. Pitt−Francis‚ D.J. Gavaghan and M Quintard In Phys. Rev. E. Vol. 87 (1). 2013. |
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[3] |
Chaste: an open source C++ library for computational physiology and biology G.R. Mirams‚ C.J. Arthurs‚ M.O. Bernabeu‚ R. Bordas‚ J. Cooper‚ A. Corrias‚ Y. Davit‚ S−J. Dunn‚ A.G. Fletcher‚ D.G. Harvey‚ M.E. Marsh‚ J. M. Osborne‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Southern‚ N. Zemzemi and D.J. Gavaghan In PLoS Computational Biology. Vol. 9. No. 3. Pages e1002970. 2013. Details | BibTeX | DOI (10.1371/journal.pcbi.1002970) | Link |
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[4] |
The interplay between tissue growth and scaffold degradation in engineered tissue constructs RD O’Dea‚ JM Osborne‚ AJ El Haj‚ HM Byrne and SL Waters In Journal of Mathematical Biology. 2012. |
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[5] |
On an infrastructure to support sharing and aggregating pre− and post−publication systems biology research data Mark Slaymaker‚ James Osborne‚ Andrew Simpson and David Gavaghan In Systems and Synthetic Biology. 2012. |
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[6] |
A two−dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath S.−J. Dunn‚ P.L. Appleton‚ S.A. Nelson‚ I.S. Näthke‚ D.J. Gavaghan and J.M. Osborne In Plos Computational Biology. No. 5. Pages e1002515. 2012. |
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[7] |
Modelling the role of the basement membrane in the colonic epithelium S.−J. Dunn‚ A.G. Fletcher‚ S.J. Chapman‚ D.J. Gavaghan and J.M. Osborne In J. Theor. Biol.. No. 298. Pages 82−91. 2012. |
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[8] |
The Influence of Bioreactor Geometry and the Mechanical Environment on Engineered Tissues J. M. Osborne‚ R. D. O'Dea‚ J. P. Whiteley‚ H. M. Byrne and S. L. Waters In Journal of Biomechanical Engineering. Vol. 132. No. 5. Pages 051006. May, 2010. |
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[9] |
A hybrid approach to multi−scale modelling of cancer J. M. Osborne‚ A. Walter‚ S. K. Kershaw‚ G. R. Mirams‚ A. G. Fletcher‚ P. Pathmanathan‚ D. Gavaghan‚ O. E. Jensen‚ P. K. Maini and H. M. Byrne In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 368. No. 1930. Pages 5013–5028. November, 2010. |
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[10] |
A numerical method for the multiphase viscous flow equations J.P. Whiteley J.M. Osborne In Computer Methods in Applied Mechanics and Engineering. Vol. 199. Pages 3402−3417. 2010. |
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[11] |
Chaste: a test−driven approach to software development for biological modelling D.J. Gavaghan J. Pitt−Francis P. Pathmanathan M.O. Bernabeu R. Bordas J. Cooper A.G. Fletcher G.R. Mirams P. Murray J.M. Osborne A. Walter S.J. Chapman A. Garny I.M.M. van Leeuwen P.K. Maini B. Rodriguez S.L. Waters J.P. Whiteley H.M. Byrne In Computer Physics Communications. Vol. 180. No. 12. Pages 2452–2471. 2009. |
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[12] |
A computational study of discrete mechanical tissue models P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman In Physical Biology. Vol. 6. No. 3. 2009. |
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[13] |
An integrative computational model for intestinal tissue renewal HM Byrne IMM van Leeuwen GR Mirams A Walter A Fletcher P Murray J Osborne S Varma SJ Young J Cooper B Doyle J Pitt−Francis L Momtahan P Pathmanathan JP Whiteley SJ Chapman DJ Gavaghan OE Jensen JR King PK Maini SL Waters In Cell Proliferation. Vol. 42. Pages 617−636. 2009. |
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[14] |
Chaste: using agile programming techniques to develop computational biology software J. Pitt−Francis‚ M.O. Bernabeu‚ J. Cooper‚ A. Garny‚ L. Momtahan‚ J. Osborne‚ P. Pathmanathan‚ B. Rodriguez‚ J.P. Whiteley and D.J. Gavaghan In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 366. No. 1878. Pages 3111–3136. 2008. |