University of Oxford Logo University of OxfordDepartment of Computer Science - Home

James Osborne : Publications

By dateBy titleBy typeBibtex

Journal papers

[1]

Chaste: A test−driven approach to software development for biological modelling

J. Pitt−Francis‚ P. Pathmanathan‚ M.O. Bernabeu‚ R. Bordas‚ J. Cooper‚ A.G. Fletcher‚ G.R. Mirams‚ P. Murray‚ J.M. Osborne‚ A. Walter‚ S.J. Chapman‚ A. Garny‚ I.M.M. van Leeuwen‚ P.K. Maini‚ B. Rodriguez‚ S.L. Waters‚ J.P. Whiteley‚ H.M. Byrne and D.J. Gavaghan

In Computer Physics Communications. Vol. 180. No. 12. Pages 2452−2471. 2009.

[2]

A hybrid approach to multi−scale modelling of cancer

J. M. Osborne‚ A. Walter‚ S. K. Kershaw‚ G. R. Mirams‚ A. G. Fletcher‚ P. Pathmanathan‚ D. Gavaghan‚ O. E. Jensen‚ P. K. Maini and H. M. Byrne

In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 368. No. 1930. Pages 5013–5028. November, 2010.

[3]

Chaste: A test−driven approach to software development for biological modelling

D.J. Gavaghan J. Pitt−Francis P. Pathmanathan M.O. Bernabeu R. Bordas J. Cooper A.G. Fletcher G.R. Mirams P. Murray J.M. Osborne A. Walter S.J. Chapman A. Garny I.M.M. van Leeuwen P.K. Maini B. Rodriguez S.L. Waters J.P. Whiteley H.M. Byrne

In Computer Physics Communications. Vol. 180. Pages 2452−2471. 2009.

[4]

A numerical method for the multiphase viscous flow equations

J.P. Whiteley J.M. Osborne

In Computer Methods in Applied Mechanics and Engineering. Vol. 199. Pages 3402−3417. 2010.

[5]

The Influence of Bioreactor Geometry and the Mechanical Environment on Engineered Tissues

J. M. Osborne‚ R. D. O'Dea‚ J. P. Whiteley‚ H. M. Byrne and S. L. Waters

In Journal of Biomechanical Engineering. Vol. 132. No. 5. Pages 051006. May, 2010.

[6]

Chaste: Using Agile Programming Techniques to Develop Computational Biology Software

Joe Pitt−Francis‚ Miguel O. Bernabeu‚ Jonathan Cooper‚ Alan Garny‚ Lee Momtahan‚ James Osborne‚ Pras Pathmanathan‚ Blanca Rodriguez‚ Jonathan P. Whiteley and David J. Gavaghan

In Philosophical Transactions of the Royal Society A. Vol. 366. No. 1878. Pages 3111−3136. 2008.

[7]

A computational study of discrete mechanical tissue models

P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman

In Physical Biology. Vol. 6. No. 3. 2009.

[8]

An integrative computational model for intestinal tissue renewal

HM Byrne IMM van Leeuwen GR Mirams A Walter A Fletcher P Murray J Osborne S Varma SJ Young J Cooper B Doyle J Pitt−Francis L Momtahan P Pathmanathan JP Whiteley SJ Chapman DJ Gavaghan OE Jensen JR King PK Maini SL Waters

In Cell Proliferation. Vol. 42. Pages 617−636. 2009.