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David Gavaghan : Publications

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@article{Johnstone2016,
  title = "Hierarchical Bayesian inference for ion channel screening dose-response data",
  author = "RH Johnstone and R Bardenet and DJ Gavaghan and GR Mirams",
  year = "2016",
  journal = "Wellcome Open Research",
  pages = "6",
  publisher = "Wellcome Trust",
  url = "https://wellcomeopenresearch.org/articles/1-6/v1",
  volume = "1",
  doi = "10.12688/wellcomeopenres.9945.1",
}
@article{Johnstone2016,
  title = "Uncertainty and variability in models of the cardiac action potential: can we build trustworthy models?",
  author = "RH Johnstone and ET Chang and R Bardenet and TP de Boer and DJ Gavaghan and P Pathmanathan and RH Clayton and GR Mirams",
  year = "2016",
  journal = "Journal of Molecular and Cellular Cardiology",
  pages = "49-62",
  volume = "96",
  doi = "10.1016/j.yjmcc.2015.11.018",
}
@article{Wang2015,
  title = "Cardiac Tissue Slices: Preparation, Handling, and Successful Optical Mapping",
  author = "K Wang and P Lee and GR Mirams and P Sarathchandra and T Borg and DJ Gavaghan and P Kohl and C Bollensdorff",
  year = "2015",
  journal = "American Journal of Physiology: Heart and Circulatory Physiology",
  pages = "H1112-H1125",
  url = "http://ajpheart.physiology.org/content/308/9/H1112",
  volume = "308",
  doi = "10.1152/ajpheart.00556.2014",
}
@article{Mirams2014,
  title = "Prediction of Thorough QT study results using action potential simulations based on ion channel screens",
  author = "GR Mirams and MR Davies and SJ Brough and MH Bridgland-Taylor and Y Cui and DJ Gavaghan and N Abi-Gerges",
  year = "2014",
  journal = "Journal of Pharmacological & Toxicological Methods",
  number = "3",
  pages = "246-254",
  volume = "70",
  doi = "10.1016/j.vascn.2014.07.002",
}
@article{Osborne2014TenSimple,
  title = "Ten simple rules for effective computational research",
  author = "Osborne, J.M. and Bernabeu, M.O. and Bruna, M. and Calderhead, B. and Cooper, J. and Dalchau, N. and Dunn, S-J. and Fletcher, A.G. and Freeman, R. and Groen, D. and Knapp, B. and McInerny, G.J. and Mirams, G.R. and Pitt-Francis, J. and Sengupta, B. and Wright, D.W. and Yates, C.A. and Gavaghan D.J. and Emmott, S. and Deane, C.",
  year = "2014",
  journal = "PLoS Computational Biology",
  number = "3",
  pages = "e1003506",
  volume = "10",
  doi = "10.1371/journal.pcbi.1003506",
}
@article{Elkins2013,
  title = "Variability in high-throughput ion channel screening data and consequences for cardiac safety assessment",
  author = "Ryan C. Elkins and Mark R. Davies and Stephen J. Brough and David J. Gavaghan and Yi Cui and Najah Abi-Gerges and Gary R. Mirams",
  year = "2013",
  journal = "Journal of Pharmacological and Toxicological Methods",
  keywords = "high-throughput, compound screening, variability, uncertainty, cardiac safety, action potential, mathematical model",
  number = "1",
  pages = "112-122",
  volume = "68",
  doi = "10.1016/j.vascn.2013.04.007",
}
@article{Beattie2013,
  title = "Evaluation of an In Silico Cardiac Safety Assay: Using Ion Channel Screening Data to Predict QT Interval Changes in the Rabbit Ventricular Wedge",
  author = "Kylie A. Beattie and Chris Luscombe and Geoff Williams and Jordi Munoz-Muriedas and David J. Gavaghan and Yi Cui and Gary R. Mirams",
  year = "2013",
  journal = "Journal of Pharmacological and Toxicological Methods",
  number = "1",
  pages = "88-96",
  url = "http://www.sciencedirect.com/science/article/pii/S105687191300244X",
  volume = "68",
  doi = "10.1016/j.vascn.2013.04.004",
}
@article{MiramsChaste2013,
  title = "Chaste: an open source C++ library for computational physiology and biology",
  author = "G.R. Mirams and C.J. Arthurs and M.O. Bernabeu and R. Bordas and J. Cooper and A. Corrias and Y. Davit and S-J. Dunn and A.G. Fletcher and D.G. Harvey and M.E. Marsh and J. M. Osborne and P. Pathmanathan and J. Pitt-Francis and J. Southern and N. Zemzemi and D.J. Gavaghan",
  year = "2013",
  journal = "PLoS Computational Biology",
  number = "3",
  pages = "e1002970",
  url = "http://dx.plos.org/10.1371/journal.pcbi.1002970",
  volume = "9",
  doi = "10.1371/journal.pcbi.1002970",
}
@article{sher2011,
  title = "A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to Cardiac Ionic Channel Modelling",
  author = "Sher, A. and Wang, K. and Wathen, A. and Maybank, P.J. and Mirams, G.R. and Abramson, D. and Noble, D. and Gavaghan, D.J.",
  year = "2013",
  journal = "Future Generation Computer Systems",
  number = "2",
  pages = "591-598",
  volume = "29",
  doi = "10.1016/j.future.2011.09.006",
}
@inproceedings{Mirams2013SPS,
  title = "Evaluation of computational modelling as a preclinical proarrhythmic safety assay",
  author = "G Mirams and K Beattie and Y Cui and C Luscombe and G Williams and D Gavaghan and N McMahon",
  year = "2013",
  journal = "Journal of Pharamcological and Toxicological Methods",
  number = "1",
  pages = "e21",
  volume = "86",
  doi = "10.1016/j.vascn.2013.01.081",
}
@article{Gibb2012,
  title = "Resolving the Three-Dimensional Histology of the Heart.",
  author = "Gibb, M. and Burton, RAB. and Bollensdorff, C. and Afonso, C. and Mansoori, T. and Schotten, U. and Gavaghan, D. and Rodriguez, B. and Schneider, JE. and Kohl, P. and Grau, V.",
  year = "2012",
  booktitle = "Computational Methods in Systems Biology 2012",
  journal = "Lecture Notes in Computer Science",
  pages = "2-16",
}
@article{BordasSiam,
  title = "A bidomain model of the cardiac specialized conduction system of the heart.",
  author = "Bordas, R. and Gillow, K. and Gavaghan, D. and Rodriguez, B. and Kay, D.",
  year = "2012",
  journal = "SIAM Journal on Applied Mathematics",
}
@article{Pras_2011_1,
  title = "Computational modelling of cardiac electro-physiology: explanation of the variability of results from different numerical solvers",
  author = "P. Pathmanathan and M. Bernabeu and S. Niederer and D. Gavaghan and D. Kay",
  year = "2012",
  journal = "Int. J. Numerical Methods in Biomedical Engineering",
  number = "8",
  pages = "890-903",
  volume = "28",
  doi = "10.1002/cnm.2467",
}
@article{Dunn12TwoDimensional,
  title = "A two-dimensional model of the colonic crypt accounting for the role of the basement membrane and pericryptal fibroblast sheath",
  author = "S.-J. Dunn, and P.L. Appleton, and S.A. Nelson, and I.S. Näthke, and D.J. Gavaghan, and J.M. Osborne",
  year = "2012",
  edition = "8",
  journal = "Plos Computational Biology",
  number = "5",
  pages = "e1002515",
  doi = "10.1371/journal.pcbi.1002515",
}
@article{Slaymaker12,
  title = "On an infrastructure to support sharing and aggregating pre- and post-publication systems biology research data",
  author = "Mark Slaymaker and James Osborne and Andrew Simpson and David Gavaghan",
  year = "2012",
  journal = "Systems and Synthetic Biology",
  number = "1--2",
  pages = "35--49",
  volume = "6",
  doi = "10.1007/s11693-012-9095-x",
}
@article{Dunn12Modelling,
  title = "Modelling the role of the basement membrane in the colonic epithelium",
  author = "S.-J. Dunn, and A.G. Fletcher, and S.J. Chapman, and D.J. Gavaghan, and J.M. Osborne",
  year = "2012",
  journal = "J. Theor. Biol.",
  number = "298",
  pages = "82-91",
  doi = "10.1016/j.jtbi.2011.12.013",
}
@article{5993,
  title = "Considerations for the use of cellular electrophysiology models within cardiac tissue simulations",
  author = "J. Cooper, A. Corrias, D. Gavaghan, D. Noble",
  year = "2011",
  journal = "Prog Biophys Mol Biol",
  number = "1",
  pages = "74-80",
  url = "http://www.cs.ox.ac.uk/chaste/publications/2011-Cooper-Model%20Interfaces.pdf",
  volume = "107",
  doi = "10.1016/j.pbiomolbio.2011.06.002",
}
@article{f20eb73a440003b,
  title = "Simulation of multiple ion channel block provides improved early prediction of compounds' clinical torsadogenic risk",
  author = "Mirams, G. R. and Cui, Y. and Sher, A. and Fink, M. and Cooper, J. and Heath, B. M. and McMahon, N. C. and Gavaghan, D. J. and Noble, D.",
  year = "2011",
  issn = "00086363",
  journal = "Cardiovascular Research",
  number = "1",
  pages = "53--61",
  url = "http://dx.doi.org/10.1093/cvr/cvr044",
  volume = "91",
  doi = "10.1093/cvr/cvr044",
}
@article{f20eabee9adffca,
  title = "Multistability property in cardiac ionic models of mammalian and human ventricular cells",
  author = "Surovyatkina, E. and Noble, D. and Gavaghan, DJ and Sher, A.",
  year = "2010",
  journal = "PROGRESS IN BIOPHYSICS \& MOLECULAR BIOLOGY    ",
  keywords = "steep",
  month = "Sep",
  number = "1",
  pages = "131--141",
  volume = "103",
}
@inproceedings{3941,
  title = "The Virtual Physiological Human ToolKit – Evolution and Sustainability",
  author = "Jonathan Cooper and John Fenner and Keith McCormack and David Gavaghan and Peter Coveney",
  year = "2010",
  booktitle = "Abstract booklet for VPH2010",
  howpublished = "Online",
  location = "Brussels",
  month = "September",
  pages = "39-41",
  url = "http://www.vph-noe.eu/vph-repository/doc_download/204-book-of-abstracts-for-vph2010",
}
@article{f20eabee9adffc9,
  title = "CARDIAC ELECTROMECHANICS: THE EFFECT OF CONTRACTION MODEL ON THE MATHEMATICAL PROBLEM AND ACCURACY OF THE NUMERICAL SCHEME",
  author = "Pathmanathan, P. and Chapman, SJ and Gavaghan, DJ and Whiteley, JP",
  year = "2010",
  journal = "QUARTERLY JOURNAL OF MECHANICS AND APPLIED MATHEMATICS    ",
  keywords = "issues",
  month = "Aug",
  number = "3",
  pages = "375--399",
  volume = "63",
}
@article{f20ea014d691950,
  title = "Systems Biology Approach to Drug Development: Application to Toxicity Assessment of Cardiac Drugs",
  author = "Rodriguez, B. and Burrage, K. and Gavaghan, DJ and Grau, V. and Kohl, P. and Noble, D.",
  year = "2010",
  journal = "CLINICAL PHARMACOLOGY \& THERAPEUTICS    ",
  keywords = "impact",
  month = "Jul",
  number = "1",
  pages = "130--134",
  volume = "88",
}
@article{f20ea014d691953,
  title = "Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems",
  author = "Pathmanathan, P. and Whiteley, JP and Chapman, SJ and Gavaghan, DJ",
  year = "2010",
  journal = "JOURNAL OF APPLIED MECHANICS-TRANSACTIONS OF THE ASME    ",
  keywords = "systems",
  month = "May",
  number = "3",
  volume = "77",
}
@article{f20ea01df916fe4,
  title = "Development of an anatomically detailed MRI-derived rabbit ventricular model and assessment of its impact on simulations of electrophysiological function",
  author = "Bishop, MJ and Plank, G. and Burton, RAB and Schneider, JE and Gavaghan, DJ and Grau, V. and Kohl, P.",
  year = "2010",
  journal = "AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY    ",
  keywords = "tissue",
  month = "Feb",
  number = "2",
  volume = "298",
}
@article{f20ea8a70f839df,
  title = "A hybrid approach to multi-scale modelling of cancer",
  author = "Osborne, J. M. and Walter, A. and Kershaw, S. K. and Mirams, G. R. and Fletcher, A. G. and Pathmanathan, P. and Gavaghan, D. and Jensen, O. E. and Maini, P. K. and Byrne, H. M.",
  year = "2010",
  journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
  month = "Nov",
  number = "1930",
  pages = "5013--5028",
  volume = "368",
  doi = "10.1098/rsta.2010.0173",
}
@article{f20eb73a4400032,
  title = "A Local Sensitivity Analysis Method for Developing Biological Models with Identifiable Parameters: Application to L-type Calcium Channel Modelling",
  author = "Sher, A. and Wang, K. and Wathen, A. and Mirams, G. and Abramson, D. and Gavaghan, D.",
  year = "2010",
  journal = "2010 IEEE Sixth International Conference on e ??: Science",
  pages = "176--181",
  url = "http://www.computer.org/portal/web/csdl/doi/10.1109/eScience.2010.56",
  doi = "10.1109/eScience.2010.56",
}
@article{f20ea01df916fcc,
  title = "Using evidence from different sources: an example using paracetamol 1000 mg plus codeine 60 mg",
  author = "Smith, L. A. and Moore, R. A. and McQuay, H. J. and Gavaghan, DJ",
  year = "2010",
  journal = "BMC Medical Research Methodology - Latest Articles",
  keywords = "treatment outcome",
  publisher = "BioMed Central",
  volume = "1",
}
@article{f20ea014d691952,
  title = "Interactions Between a Voltage Sensor and a Toxin via Multiscale Simulations",
  author = "Wee, CL and Gavaghan, DJ and Sansom, MSP",
  year = "2010",
  journal = "BIOPHYSICAL JOURNAL    ",
  keywords = "protein",
  number = "8",
  pages = "1558--1565",
  volume = "98",
}
@article{f20ea014d691951,
  title = "numerical guide to the solution of the bidomain equations of cardiac electrophysiology",
  author = "Pathmanathan, P. and Bernabeu, MO and Bordas, R. and Cooper, J. and Garny, A. and Pitt-Francis, JM and Whiteley, JP and Gavaghan, DJ",
  year = "2010",
  journal = "PROGRESS IN BIOPHYSICS \& MOLECULAR BIOLOGY    ",
  keywords = "gmres",
  month = "00",
  number = "2",
  pages = "136--155",
  volume = "102",
}
@article{f20ea014d69194e,
  title = "POSTERIORI ERROR ANALYSIS FOR THE USE OF LOOKUP TABLES IN CARDIAC ELECTROPHYSIOLOGY SIMULATIONS",
  author = "Cooper, J. and Whiteley, JP and Gavaghan, DJ",
  year = "2010",
  journal = "SIAM JOURNAL ON SCIENTIFIC COMPUTING    ",
  keywords = "model",
  number = "4",
  pages = "2167--2189",
  volume = "32",
}
@article{f20eabee9adffc7,
  title = "Integrated approach for the study of anatomical variability in the cardiac Purkinje system: From high resolution MRI to electrophysiology simulation",
  author = "Bordas, R. and Grau, V. and Burton, R. B. and Hales, P. and Schneider, J. E. and Gavaghan, DJ and Kohl, P. and Rodriguez, B.",
  year = "2010",
  journal = "Conf Proc IEEE Eng Med Biol Soc  ",
  pages = "6793--6",
  volume = "1",
}
@article{f20eabee9adffc8,
  title = "global sensitivity tool for cardiac cell modeling: Application to ionic current balance and hypertrophic signaling",
  author = "Sher, Anna A. and Cooling, Michael T. and Bethwaite, Blair and Tan, Jefferson and Peachey, Tom and Enticott, Colin and Garic, Slavisa and Gavaghan, David J. and Noble, Denis and Abramson, David and Crampin, Edmund J.",
  year = "2010",
  journal = "Conf Proc IEEE Eng Med Biol Soc  ",
  pages = "1498--502",
  volume = "1",
}
@article{3940,
  title = "A numerical guide to the solution of the bidomain equations of cardiac electrophysiology",
  author = "Pathmanathan, P.a , Bernabeu, M.O.a , Bordas, R.a , Cooper, J.a , Garny, A.b , Pitt-Francis, J.M.a , Whiteley, J.P.a , Gavaghan, D.J.a",
  year = "2010",
  affiliation = "Oxford University Computing Laboratory, Wolfson Building, Parks Road, Oxford OX1 3QD, United Kingdom; Oxford University Department of Physiology, Anatomy and Genetics, Sherrington Building, Parks Road, Oxford OX1 3PT, United Kingdom",
  journal = "Progress in Biophysics and Molecular Biology",
  note = "cited By 33",
  number = "2-3",
  pages = "136-155",
  url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-77954215423&partnerID=40&md5=38f628d121cb09600d029149d638e076",
  volume = "102",
  doi = "10.1016/j.pbiomolbio.2010.05.006",
}
@article{Whiteley 2010a,
  title = "A Note on the Effect of the Choice of Weak Form on GMRES Convergence for Incompressible Nonlinear Elasticity Problems",
  author = "P. Pathmanathan, and J.P. Whiteley, and S.J. Chapman and D.J. Gavaghan",
  year = "2010",
  journal = "Journal of Applied Mechanics",
  pages = "034501",
  volume = "77",
  doi = "10.1115/1.4000414",
}
@inproceedings{Simpson_et_al_2010b,
  title = "On the secure sharing and aggregation of data to support Systems Biology research",
  author = "Andrew Simpson and Mark Slaymaker and David Gavaghan",
  year = "2010",
  booktitle = "Proceedings of the 7th International Conference on Data Integration in the Life Sciences (DILS 2010)",
  pages = "58--73",
  publisher = "Springer-Verlag Lecture Notes in Computer Science, volume 6254",
}
@proceedings{f20ea014d69194f,
  title = "High-throughput cardiac science on the Grid",
  author = "Abramson, D. and Bernabeu, MO and Bethwaite, B. and Burrage, K. and Corrias, A. and Enticott, C. and Garic, S. and Gavaghan, DJ and Peachey, T. and Pitt-Francis, J. and Pueyo, E. and Rodriguez, B. and Sher, A. and Tan, J.",
  year = "2010",
  keywords = "ca2+",
  number = "1925",
  pages = "3907--3923",
  series = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  volume = "368",
}
@article{f20ea014d691959,
  title = "comparison of numerical methods used for finite element modelling of soft tissue deformation",
  author = "Pathmanathan, P. and Gavaghan, DJ and Whiteley, J.",
  year = "2009",
  journal = "The Journal of Strain Analysis for Engineering Design",
  keywords = "stress",
  month = "Jul",
  number = "5",
  pages = "391--406",
  publisher = "Professional Engineering Publishing",
  volume = "44",
}
@article{Chaste2,
  title = "Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library",
  author = "Bernabeu, M.O. and Bordas, R. and Pathmanathan, P. and Pitt-Francis, J. and Cooper, J. and Garny, A. and Gavaghan, D.J. and Rodriguez, B. and Southern, J.A. and Whiteley, J.P.",
  year = "2009",
  journal = "Phil Trans Roy Soc (A)",
  month = "May",
  number = "1895",
  pages = "1907-1930",
  volume = "367",
  doi = "10.1098/rsta.2008.0309",
}
@article{f20ea014d69195c,
  title = "Inverse membrane problems in elasticity",
  author = "Pathmanathan, P. and Chapman, SJ and Gavaghan, DJ",
  year = "2009",
  issn = "00335614",
  journal = "QUARTERLY JOURNAL OF MECHANICS AND APPLIED MATHEMATICS    ",
  keywords = "breast",
  month = "Feb",
  number = "1",
  pages = "67--87",
  url = "http://dx.doi.or",
  volume = "62",
  doi = "10.1093/qjmam/hbn026",
}
@article{ChasteCPC09,
  title = "Chaste: A test-driven approach to software development for biological modelling",
  author = "Pitt-Francis, J.a , Pathmanathan, P.a , Bernabeu, M.O.a , Bordas, R.a , Cooper, J.a , Fletcher, A.G.b c , Mirams, G.R.d , Murray, P.b , Osborne, J.M.a c , Walter, A.b , Chapman, S.J.b , Garny, A.d , van Leeuwen, I.M.M.e , Maini, P.K.b c , Rodríguez, B.a , Waters, S.L.b , Whiteley, J.P.a b , Byrne, H.M.f , Gavaghan, D.J.a c",
  year = "2009",
  affiliation = "Oxford University Computing Laboratory, University of Oxford, Wolfson Building, Parks Road, Oxford, OX1 3QD, United Kingdom; Mathematical Institute, 24-29 St. Giles, Oxford, OX1 3LB, United Kingdom; Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford, OX1 3QU, United Kingdom; Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Parks Road, Oxford, OX1 3PT, United Kingdom; Department of Surgery, Molecular Oncology Ninewells Hospital, University of Dundee, Dundee, DD1 9SY, United Kingdom; School of Mathematical Sciences, University of Nottingham, University Park, Nottingham, NG7 2RD, United Kingdom",
  journal = "Computer Physics Communications",
  note = "cited By 102",
  number = "12",
  pages = "2452-2471",
  url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-70350588995&partnerID=40&md5=6bf349702a12bd2e867fe8148a17d9bb",
  volume = "180",
  doi = "10.1016/j.cpc.2009.07.019",
}
@article{f20ea01df916fe8,
  title = "virtual physiological human: tools and applications I",
  author = "Gavaghan, DJ and Coveney, PV and Kohl, P.",
  year = "2009",
  issn = "1364503X",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  keywords = "physiome project",
  number = "1895",
  pages = "1817--1821",
  url = "http://dx.doi.org/10.1098/rsta.2009.0070",
  volume = "367",
  doi = "10.1098/rsta.2009.0070",
}
@article{f20ea01df916fe7,
  title = "Relationship between structural changes and hyperpolarized gas magnetic resonance imaging in chronic obstructive pulmonary disease using computational simulations with realistic alveolar geometry",
  author = "Plotkowiak, M. and Burrowes, K. and Wolber, J. and Buckley, C. and Davies, R. and Gleeson, F. and Gavaghan, DJ and Grau, V.",
  year = "2009",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  keywords = "computed-tomography",
  number = "1896",
  pages = "2347--2369",
  volume = "367",
}
@article{f20ea01df916fe6,
  title = "virtual physiological human: tools and applications II INTRODUCTION",
  author = "Kohl, P. and Coveney, PV and Gavaghan, DJ",
  year = "2009",
  issn = "1364503",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  number = "1896",
  pages = "2121--2123",
  url = "http://dx.doi.org/10.1098/rsta.2009.0071",
  volume = "367",
  doi = "10.1098/rsta.2009.0071",
}
@article{f20e9fbcf8ad986,
  title = "Generation of histo-anatomically representative models of the individual heart: tools and application",
  author = "Plank, G. and Burton, RAB and Hales, P. and Bishop, M. and Mansoori, T. and Bernabeu, MO and Garny, A. and Prassl, AJ and Bollensdorff, C. and Mason, F. and Mahmood, F. and Rodriguez, B. and Grau, V. and Schneider, JE and Gavaghan, DJ and Kohl, P.",
  year = "2009",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  keywords = "electrical propagation",
  number = "1896",
  pages = "2257--2292",
  volume = "367",
}
@article{f20ea014d69195a,
  title = "An investigation into the role of the optical detection set-up in the recording of cardiac optical mapping signals: A Monte Carlo simulation study",
  author = "Bishop, MJ and Bub, G. and Garny, A. and Gavaghan, DJ and Rodriguez, B.",
  year = "2009",
  journal = "PHYSICA D-NONLINEAR PHENOMENA    ",
  keywords = "transport",
  number = "11",
  pages = "1008--1018",
  volume = "238",
}
@article{f20ea014d691957,
  title = "Designer based Fourier transformed voltammetry: A multi-frequency, variable amplitude, sinusoidal waveform",
  author = "Tan, YJ and Stevenson, GP and Baker, RE and Elton, D. and Gillow, K. and Zhang, J. and Bond, AM and Gavaghan, DJ",
  year = "2009",
  journal = "JOURNAL OF ELECTROANALYTICAL CHEMISTRY    ",
  keywords = "ferrocenemethanol",
  number = "1",
  pages = "11--21",
  volume = "634",
}
@article{f20ea014d691956,
  title = "L-TYPE CALCIUM CHANNELS AND CALCIUM REGULATION IN VENTRICULAR MYOCYTES: IN SILICO STUDIES",
  author = "Sher, A. and Mirams, G. and Gavaghan, DJ and Noble, D. and Fink, M.",
  year = "2009",
  issn = "18806546",
  journal = "JOURNAL OF PHYSIOLOGICAL SCIENCES    ",
  pages = "259--259",
  volume = "59",
}
@article{4226,
  title = "Assessing the relative influence of branching structure on pulmonary blood flow with computational models",
  author = "Tom Doel and Kelly S Burrowes and Jonathan P Whiteley and Vicente Grau and David J Gavaghan",
  year = "2009",
  issn = "18806546",
  journal = "American Journal of Respiratory and Critical Care Medicine",
  pages = "A6027",
  volume = "179",
}
@article{cancerchaste1,
  title = "An integrative computational model for intestinal tissue renewal",
  author = "I.M.M. van Leeuwen, and G.R. Mirams, and A. Walter, and A. Fletcher, and P. Murray, and J. Osborne, and S. Varma, and S.J. Young, and J. Cooper, and B. Doyle, and J. Pitt-Francis, and L. Momtahan, and P. Pathmanathan, and J.P. Whiteley, and S.J. Chapman, and D.J. Gavaghan, and O.E. Jensen, and J.R. King, and P.K. Maini, and S.L. Waters, and H.M. Byrne",
  year = "2009",
  journal = "Cell Proliferation",
  keywords = "Wnt signalling, Crypt dynamics, Cell cycle, Colorectal cancer, Stem cells",
  pages = "617-636",
  volume = "42",
  doi = "10.1111/j.1365-2184.2009.00627.x",
}
@proceedings{f20ea01df916fe5,
  title = "Comparison of Rule-Based and DTMRI-Derived Fibre Architecture in a Whole Rat Ventricular Computational Model",
  author = "Bishop, MJ and Hales, P. and Plank, G. and Gavaghan, DJ and Scheider, J. and Grau, V.",
  year = "2009",
  keywords = "dynamics",
  pages = "87--96",
  series = "FUNCTIONAL IMAGING AND MODELING OF THE HEART, PROCEEDINGS   Book Series: Lecture Notes in Computer Science    ",
  volume = "5528",
}
@article{f20ea014d69195e,
  title = "Predicting Tumor Location by Modeling the Deformation of the Breast",
  author = "Pathmanathan, P. and Gavaghan, DJ and Whiteley, JP and Chapman, SJ and Brady, JM",
  year = "2008",
  journal = "IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING    ",
  keywords = "tissue",
  month = "Oct",
  number = "10",
  pages = "2471--2480",
  volume = "55",
}
@article{f20ea014d69195e,
  title = "Predicting Tumor Location by Modeling the Deformation of the Breast",
  author = "Pathmanathan, P.and Gavaghan, DJand Whiteley, JPand Chapman, SJand Brady, JM",
  year = "2008",
  journal = "IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING    ",
  keywords = "tissue",
  month = "Oct",
  number = "10",
  pages = "2471--2480",
  volume = "55",
}
@article{f20ea01df916fec,
  title = "role of the Na+/Ca2+ exchangers in Ca2+ dynamics in ventricular myocytes",
  author = "Sher, AA and Noble, PJ and Hinch, R. and Gavaghan, DJ and Noble, D.",
  year = "2008",
  journal = "PROGRESS IN BIOPHYSICS \& MOLECULAR BIOLOGY    ",
  keywords = "induced release",
  month = "00",
  number = "1",
  pages = "377--398",
  volume = "96",
}
@article{f20ea01df916fe9,
  title = "Lipid bilayer deformation and the free energy of interaction of a Kv channel gating-modifier toxin",
  author = "Wee, CL and Gavaghan, DJ and Sansom, MSP",
  year = "2008",
  journal = "Biophysical Journal",
  keywords = "phospholipid-bilayer",
  number = "8",
  pages = "3816--3826",
  publisher = "Biophysical Society",
  volume = "95",
}
@article{f20ea014d691962,
  title = "role of transmural ventricular heterogeneities in cardiac vulnerability to electric shocks",
  author = "Maharaj, T. and Blake, R. and Trayanova, N. and Gavaghan, DJ and Rodriguez, B.",
  year = "2008",
  journal = "PROGRESS IN BIOPHYSICS \& MOLECULAR BIOLOGY    ",
  keywords = "k+ current",
  month = "00",
  number = "1",
  pages = "321--338",
  volume = "96",
}
@article{f20ea014d691961,
  title = "Multi-scale computational modelling in biology and physiology",
  author = "Southern, J. and Pitt-Francis, J. and Whiteley, J. and Stokeley, D. and Kobashi, H. and Nobes, R. and Kadooka, Y. and Gavaghan, DJ",
  year = "2008",
  journal = "PROGRESS IN BIOPHYSICS \& MOLECULAR BIOLOGY    ",
  keywords = "3-dimensional model",
  month = "00",
  number = "1",
  pages = "60--89",
  volume = "96",
}
@article{f20ea014d69195f,
  title = "interaction of phospholipase A2 with a phospholipid bilayer: Coarse-grained molecular dynamics simulations",
  author = "Wee, CL and Balali-Mood, K. and Gavaghan, DJ and Sansom, MSP",
  year = "2008",
  journal = "BIOPHYSICAL JOURNAL    ",
  keywords = "force-field",
  number = "4",
  pages = "1649--1657",
  volume = "95",
}
@article{Chaste.08:Chaste,
  title = "Chaste: using agile programming techniques to develop computational biology software",
  author = "Pitt-Francis, J. and Bernabeu, M.O. and Cooper, J. and Garny, A. and Momtahan, L. and Osborne, J. and Pathmanathan, P. and Rodriguez, B. and Whiteley, J.P. and Gavaghan, D.J.",
  year = "2008",
  journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
  number = "1878",
  pages = "3111--3136",
  publisher = "The Royal Society",
  volume = "366",
  doi = "10.1098/rsta.2008.0096",
}
@proceedings{f20ea01df916feb,
  title = "High performance computer simulations of cardiac electrical function based on high resolution MRI datasets",
  author = "Plotkowiak, M. and Rodriguez, B. and Plank, G. and Schneider, JE and Gavaghan, DJ and Kohl, P. and Grau, V.",
  year = "2008",
  pages = "571--580",
  series = "Lecture Notes in Computer Science: LECTURE NOTES IN COMPUTER SCIENCE    ",
  volume = "5101",
}
@proceedings{f20ea014d691960,
  title = "Incorporating local Ca2+ dynamics into single cell ventricular models",
  author = "Sher, A. and Abramson, D. and Enticott, C. and Garic, S. and Gavaghan, DJ and Noble, D. and Noble, P. and Peachey, T.",
  year = "2008",
  pages = "66--75",
  series = "COMPUTATIONAL SCIENCE - ICCS 2008, PT 1   Book Series: LECTURE NOTES IN COMPUTER SCIENCE    ",
  volume = "5101",
}
@proceedings{f20ea014d69195d,
  title = "High Performance Computer Simulations for the Study of Biological Function in 3D Heart Models Incorporating Fibre Orientation and Realistic Geometry at Para-Cellular Resolution",
  author = "Bernabeu, MO and Bishop, MJ and Pitt-Francis, J. and Gavaghan, DJ and Grau, V. and Rodriguez, B.",
  year = "2008",
  keywords = "monodomain",
  pages = "721--724",
  series = "COMPUTERS IN CARDIOLOGY 2008, VOLS 1 AND 2    ",
}
@article{f20ea01df916fef,
  title = "Non-linear modelling of breast tissue",
  author = "Whiteley, JP and Gavaghan, DJ and Chapman, SJ and Brady, JM",
  year = "2007",
  journal = "MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA    ",
  keywords = "mr-images",
  month = "Sep",
  number = "3",
  pages = "327--345",
  volume = "24",
}
@article{f20ea014d691967,
  title = "Integrative Biology - the challenges of developing a collaborative research environment for heart and cancer modelling",
  author = "Lloyd, S. and Gavaghan, DJ and Simpson, A. and Mascord, M. and Seneurine, C. and Williams, G. and Pitt-Francis, J. and Boyd, D. and Mac, Randal D. and Sastry, L. and Nagella, S. and Weeks, K. and Fowler, R. and Hanlon, D. and Handley, J. and de, Fabritiis G.",
  year = "2007",
  journal = "FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF GRID COMPUTING THEORY METHODS AND APPLICATIONS    ",
  month = "Mar",
  number = "3",
  pages = "457--465",
  volume = "23",
}
@article{f20ea01df916ff0,
  title = "Synchronization between arterial blood pressure and cerebral oxyhaemoglobin concentration investigated by wavelet cross-correlation",
  author = "Rowley, AB and Payne, SJ and Tachtsidis, I. and Ebden, MJ and Whiteley, JP and Gavaghan, DJ and Tarassenko, L. and Smith, M. and Elwell, CE and Delpy, DT",
  year = "2007",
  journal = "PHYSIOLOGICAL MEASUREMENT    ",
  keywords = "humans",
  month = "Feb",
  number = "2",
  pages = "161--173",
  volume = "28",
}
@article{f20ea01df916fee,
  title = "role of photon scattering in optical signal distortion during arrhythmia and defibrillation",
  author = "Bishop, MJ and Rodriguez, B. and Qu, F. and Efimov, IR and Gavaghan, DJ and Trayanova, NA",
  year = "2007",
  journal = "BIOPHYSICAL JOURNAL    ",
  keywords = "depth",
  month = "Nov",
  number = "10",
  pages = "3714--3726",
  volume = "93",
}
@article{f20ea014d691965,
  title = "Quiescence as a mechanism for cyclical hypoxia and acidosis",
  author = "Smallbone, K. and Gavaghan, DJ and Maini, PK and Brady, JM",
  year = "2007",
  journal = "JOURNAL OF MATHEMATICAL BIOLOGY    ",
  keywords = "ph",
  month = "Nov",
  number = "5",
  pages = "767--779",
  volume = "55",
}
@article{f20ea014d691969,
  title = "SGTx1, a Kv channel gating-modifier toxin, binds to the interfacial region of lipid bilayers",
  author = "Wee, CL and Bemporad, D. and Sands, ZA and Gavaghan, DJ and Sansom, MSP",
  year = "2007",
  journal = "Biophysical Journal",
  keywords = "venom",
  month = "Jan",
  number = "1",
  publisher = "Biophysical Society",
  volume = "92",
}
@article{f20ea014d691968,
  title = "Metabolic changes during carcinogenesis: Potential impact on invasiveness",
  author = "Smallbone, K. and Gatenby, RA and Gillies, RJ and Maini, PK and Gavaghan, DJ",
  year = "2007",
  journal = "JOURNAL OF THEORETICAL BIOLOGY    ",
  keywords = "spheroids",
  number = "4",
  pages = "703--713",
  volume = "244",
}
@article{f20ea014d691963,
  title = "Conformational dynamics of a lipid-interacting protein: MD simulations of saposin B",
  author = "Stokeley, D. and Bemporad, D. and Gavaghan, DJ and Sansom, MSP",
  year = "2007",
  journal = "BIOCHEMISTRY    ",
  keywords = "program",
  number = "47",
  pages = "13573--13580",
  volume = "46",
}
@proceedings{f20ea01df916fed,
  title = "Unstructured spectral elements applied to the bidomain model",
  author = "Jeannequin, N. and Whiteley, J. and Gavaghan, DJ",
  year = "2007",
  keywords = "equations",
  pages = "292--295",
  series = "Numerical Analysis and Applied Mathematics   Book Series: AIP CONFERENCE PROCEEDINGS    ",
  volume = "936",
}
@proceedings{f20ea014d691966,
  title = "Functional significance of Na+/Ca2+ exchangers co-localization with ryanodine receptors",
  author = "Sher, AA and Hinch, R. and Noble, PJ and Gavaghan, DJ and Noble, D.",
  year = "2007",
  keywords = "model",
  pages = "215--220",
  series = "SODIUM-CALCIUM EXCHANGE AND THE PLASMA MEMBRANE CA2+-ATPASE IN CELL FUNCTION: FIFTH INTERNATIONAL CONFERENCE   Book Series",
  volume = "1099",
}
@proceedings{f20ea014d691964,
  title = "Photon scattering effects in optical mapping of propagation and arrhythmogenesis in the heart",
  author = "Bishop, MJ and Gavaghan, DJ and Trayanova, NA and Rodriguez, B.",
  year = "2007",
  keywords = "depth",
  month = "00",
  number = "6",
  series = "JOURNAL OF ELECTROCARDIOLOGY    ",
  volume = "40",
}
@article{f20ea014d691970,
  title = "Development of a functional magnetic resonance imaging simulator for modeling realistic rigid-body motion artifacts",
  author = "Drobnjak, I. and Gavaghan, DJ and Suli, E. and Pitt-Francis, J. and Jenkinson, M.",
  year = "2006",
  journal = "MAGNETIC RESONANCE IN MEDICINE    ",
  keywords = "brain",
  month = "Aug",
  number = "2",
  pages = "364--380",
  volume = "56",
}
@article{f20ea014d691973,
  title = "Synthesis of voltage-sensitive optical signals: Application to panoramic optical mapping",
  author = "Bishop, MJ and Rodriguez, B. and Eason, J. and Whiteley, JP and Trayanova, N. and Gavaghan, DJ",
  year = "2006",
  journal = "BIOPHYSICAL JOURNAL    ",
  keywords = "heart",
  month = "Apr",
  number = "8",
  pages = "2938--2945",
  volume = "90",
}
@article{f20ea01df916ff6,
  title = "Numerical simulation of the effects of experimental error on the higher harmonic components of Fourier transformed AC voltammograms",
  author = "Gavaghan, DJ and Bond, AM",
  year = "2006",
  journal = "Electroanalysis",
  keywords = "algorithm",
  month = "Feb",
  number = "4",
  pages = "333--344",
  publisher = "Wiley",
  volume = "18",
}
@article{f20ea01df916ff3,
  title = "Inference of intramural wavefront orientation from optical recordings in realistic whole-heart models",
  author = "Bishop, MJ and Rodriguez, B. and Trayanova, N. and Gavaghan, DJ",
  year = "2006",
  issn = "00063495",
  journal = "Biophysical Journal",
  keywords = "signals",
  month = "Nov",
  number = "10",
  pages = "3957--3958",
  publisher = "Biophysical Society",
  url = "http://dx.doi.org/10.1529/biophysj.106.092544",
  volume = "91",
  doi = "10.1529/biophysj.106.092544",
}
@article{f20ea01df916ff7,
  title = "Finite element solution of a membrane covered electrode problem",
  author = "Gillow, K. and Gavaghan, DJ and Suli, E.",
  year = "2006",
  issn = "00220728",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "diffusion",
  number = "1",
  pages = "18--24",
  publisher = "Elsevier Science",
  url = "http://dx.d",
  volume = "587",
  doi = "10.1016/j.jelechem.2005.09.029",
}
@article{f20ea01df916ff5,
  title = "Mathematical models in physiology",
  author = "Gavaghan, DJ and Garny, A. and Maini, PK and Kohl, P.",
  year = "2006",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  keywords = "dynamics",
  number = "1842",
  pages = "1099--1106",
  volume = "364",
}
@article{f20ea01df916ff4,
  title = "Achieving coexistence - Comment on ``Modelling rain forest diversity: The role of competition'' by Bampfylde et al. (2005)",
  author = "Bampfylde, CJ and Brown, ND and Gavaghan, DJ and Maini, PK",
  year = "2006",
  issn = "03043800",
  journal = "Ecological Modelling",
  number = "3",
  pages = "407--408",
  publisher = "Elsevier Science",
  url = "http://dx.doi.org/10.1016/j.ecolmodel.2006.01.001",
  volume = "195",
  doi = "10.1016/j.ecolmodel.2006.01.001",
}
@article{f20ea01df916fc8,
  title = "Biomathematical modelling II - Preface",
  author = "Kohl, P. and Garny, A. and Maini, PK and Gavaghan, DJ",
  year = "2006",
  issn = "1364503",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  number = "1843",
  pages = "1331--1331",
  url = "http://dx.doi.org/10.1098/rsta.2006.1787",
  volume = "364",
  doi = "10.1098/rsta.2006.1787",
}
@article{f20ea014d691974,
  title = "Computation of currents at microelectrodes using hp-DGFEM",
  author = "Gillow, K. and Gavaghan, DJ and Suli, E.",
  year = "2006",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "efficient simulation",
  number = "1",
  pages = "1--17",
  publisher = "Elsevier Science",
  volume = "587",
}
@article{f20ea014d691972,
  title = "Post-genomic science: cross-disciplinary and large-scale collaborative research and its organizational and technological challenges for the scientific research process",
  author = "Welsh, E. and Jirotka, M. and Gavaghan, DJ",
  year = "2006",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  keywords = "biology",
  number = "1843",
  pages = "1533--1549",
  volume = "364",
}
@article{f20ea014d691971,
  title = "Biomathematical modelling II - Preface",
  author = "Kohl, P. and Garny, A. and Maini, PK and Gavaghan, DJ",
  year = "2006",
  issn = "1364503",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  number = "1843",
  pages = "1331--1331",
  url = "http://dx.doi.org/10.1098/rsta.2006.1787",
  volume = "364",
  doi = "10.1098/rsta.2006.1787",
}
@article{f20ea014d69196f,
  title = "Adaptive finite element methods in electrochemistry",
  author = "Gavaghan, DJ and Gillow, K. and Suli, E.",
  year = "2006",
  journal = "Langmuir",
  keywords = "chronoamperometric current",
  number = "25",
  pages = "10666--10682",
  publisher = "American Chemical Society",
  volume = "22",
}
@article{f20ea014d69196e,
  title = "Three-dimensional models of individual cardiac histoanatomy: Tools and challenges",
  author = "Burton, RAB and Plank, G. and Schneider, JE and Grau, V. and Ahammer, H. and Keeling, SL and Lee, J. and Smith, NP and Gavaghan, DJ and Trayanova, N. and Kohl, P.",
  year = "2006",
  journal = "Annals of the New York Academy of Sciences: ANNALS OF THE NEW YORK ACADEMY OF SCIENCES    ",
  keywords = "heterogeneity",
  pages = "301--319",
  publisher = "New York Academy of Sciences",
  volume = "1080",
}
@article{f20ea014d69196d,
  title = "Three-dimensional models of individual cardiac histoanatomy: Tools and challenges",
  author = "Burton, RAB and Plank, G. and Schneider, JE and Grau, V. and Ahammer, H. and Keeling, SL and Lee, J. and Smith, NP and Gavaghan, DJ and Trayanova, N. and Kohl, P.",
  year = "2006",
  journal = "Annals of the New York Academy of Sciences: ANNALS OF THE NEW YORK ACADEMY OF SCIENCES    ",
  keywords = "heterogeneity",
  pages = "301--319",
  publisher = "New York Academy of Sciences",
  volume = "1080",
}
@article{f20ea014d69196c,
  title = "Vulnerability to electric shocks in the regionally-ischemic ventricles",
  author = "Rodriguez, Blanca and Tice, Brock and Blake, Robert and Gavaghan, David and Trayanova, Natalia",
  year = "2006",
  journal = "Conf Proc IEEE Eng Med Biol Soc  ",
  keywords = "ventricular dysfunction, left",
  pages = "2280--3",
  volume = "1",
}
@article{f20ea014d69196b,
  title = "Transmural electrophysiological heterogeneities in action potential duration increase the upper limit of vulnerability",
  author = "Maharaj, T. and Rodriguez, B. and Blake, R. and Trayanova, N. A. and Gavaghan, D. J.",
  year = "2006",
  journal = "Conf Proc IEEE Eng Med Biol Soc  ",
  keywords = "ventricular fibrillation",
  pages = "4043--6",
  volume = "1",
}
@article{f20ea014d69196a,
  title = "Modulation of shock-end virtual electrode polarisation as a direct result of 3D fluorescent photon scattering",
  author = "Bishop, M. J. and Rodriguez, B. and Trayanova, N. and Gavaghan, D. J.",
  year = "2006",
  journal = "Conf Proc IEEE Eng Med Biol Soc  ",
  keywords = "spectrometry, fluorescence",
  pages = "1556--9",
  volume = "1",
}
@proceedings{f20ea01df916ff2,
  title = "Integrative biology: Real science through e-science",
  author = "Lloyd, S. and Gavaghan, DJ and Boyd, D. and Noble, D. and Rodriguez, B. and Maharaj, T. and Bishop, M. and Clayton, R. and Handley, J. and Brodlie, K. and Plank, G.",
  year = "2006",
  keywords = "heart",
  pages = "84--92",
  series = "Proceedings of the UK e-Science All Hands Meeting 2006    ",
}
@proceedings{f20ea01df916ff1,
  title = "prototype infrastructure for the secure aggregation of imaging and pathology data for colorectal cancer care",
  author = "Slaymaker, M. and Simpson, A. and Brady, M. and Gavaghan, DJ and Reddington, F. and Quirke, P.",
  year = "2006",
  pages = "63--68",
  series = "Proceedings of the IEEE Symposium on Computer-Based Medical Systems: COMPUTER-BASED MEDICAL SYSTEMS",
}
@article{f20ea01df916fbc,
  title = "Fourier transformed large amplitude square-wave voltammetry as an alternative to impedance spectroscopy: Evaluation of resistance, capacitance and electrode kinetic effects via an heuristic approach",
  author = "Sher, AA and Bond, AM and Gavaghan, DJ and Gillow, K. and Duffy, NW and Guo, SX and Zhang, J.",
  year = "2005",
  journal = "Electroanalysis",
  keywords = "reversible process",
  month = "Aug",
  number = "15",
  pages = "1450--1462",
  publisher = "Wiley",
  volume = "17",
}
@article{f20ea01df916ff8,
  title = "role of acidity in solid tumour growth and invasion",
  author = "Smallbone, K. and Gavaghan, DJ and Gatenby, RA and Maini, PK",
  year = "2005",
  journal = "Journal of theoretical biology",
  keywords = "cells",
  number = "4",
  pages = "476--484",
  publisher = "Elsevier Science",
  volume = "235",
}
@article{f20ea01df916fbd,
  title = "Towards a Grid infrastructure to support integrative approaches to biological research",
  author = "Gavaghan, DJ and Simpson, AC and Lloyd, S. and Mac, Randal DF and Boyd, DRS",
  year = "2005",
  issn = "1",
  journal = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES    ",
  keywords = "heart",
  number = "1833",
  pages = "1829--1841",
  volume = "363",
}
@article{f20ea01df916fbb,
  title = "Modelling rain forest diversity: The role of competition",
  author = "Bampfylde, CJ and Brown, ND and Gavaghan, DJ and Maini, PK",
  year = "2005",
  journal = "Ecological Modelling",
  keywords = "phenology",
  number = "2",
  pages = "253--278",
  publisher = "Elsevier Science",
  volume = "188",
}
@proceedings{f20ea01df916fd3,
  title = "Role of shock timing in cardiac vulnerability to electric shocks",
  author = "Rodriguez, B. and Trayanova, N. and Gavaghan, DJ",
  year = "2005",
  keywords = "defibrillation",
  pages = "287--294",
  series = "Anaesthesia, Pain, Intensive Care and Emergency Medicine    ",
}
@proceedings{f20ea01df916fd2,
  title = "Challenges of ultra large scale integration of biomedical computing systems",
  author = "Begent, RHJ and Brady, JM and Finkelstein, A. and Gavaghan, DJ and Kerr, P. and Parkinson, H. and Reddington, F. and Wilkinson, JM",
  year = "2005",
  pages = "64--69",
  series = "Proceedings of the IEEE Symposium on Computer-Based Medical Systems: COMPUTER-BASED MEDICAL SYSTEMS",
}
@proceedings{f20ea01df916fba,
  title = "Digital mammography: A world without film?",
  author = "Lloyd, S. and Jirotka, M. and Simpson, AC and Highnam, RP and Gavaghan, DJ and Watson, D. and Brady, JM",
  year = "2005",
  number = "2",
  pages = "168--171",
  publisher = "Schattauer GMBH",
  series = "Methods of information in medicine",
  volume = "44",
}
@article{f20ea01df916ff9,
  title = "Resistance, capacitance, and electrode kinetic effects in Fourier-transformed large-amplitude sinusoidal voltammetry: Emergence of powerful and intuitively obvious tools for recognition of patterns of behavior",
  author = "Sher, AA and Bond, AM and Gavaghan, DJ and Harriman, K. and Feldberg, SW and Duffy, MW and Guo, SX and Zhang, J.",
  year = "2004",
  journal = "Analytical chemistry",
  keywords = "square-wave",
  number = "21",
  pages = "6214--6228",
  publisher = "American Chemical Society",
  volume = "76",
}
@article{f20ea01df916fbf,
  title = "Time dependent EC ', ECE and EC2E mechanisms at microdisc electrodes: simulations using adaptive finite element methods",
  author = "Harriman, K. and Gavaghan, DJ and Suli, E.",
  year = "2004",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "currents",
  number = "1",
  pages = "35--46",
  publisher = "Elsevier Science",
  volume = "569",
}
@article{f20ea01df916fbe,
  title = "Simulation of linear sweep voltammetry using an adaptive finite element algorithm",
  author = "Harriman, K. and Gavaghan, DJ and Suli, E.",
  year = "2004",
  issn = "00220728",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "chronoamperometry",
  number = "1",
  pages = "169--174",
  publisher = "Elsevier Science",
  url = "http://dx.doi.org/10.1016/j.jelec",
  volume = "573",
  doi = "10.1016/j.jelechem.2004.05.033",
}
@article{f20ea01df916ffb,
  title = "Mathematical modelling of pulmonary gas transport",
  author = "Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "2003",
  journal = "JOURNAL OF MATHEMATICAL BIOLOGY    ",
  keywords = "o2",
  month = "Jul",
  number = "1",
  pages = "79--99",
  volume = "47",
}
@article{f20ea01df916fc0,
  title = "Adaptive finite element simulation of chronoamperometry at microdisc electrodes",
  author = "Harriman, K. and Gavaghan, DJ and Suli, E.",
  year = "2003",
  journal = "Electrochemistry Communications",
  keywords = "currents",
  month = "Jul",
  number = "7",
  pages = "519--529",
  publisher = "Elsevier Science",
  volume = "5",
}
@article{f20ea01df916fc1,
  title = "Periodic breathing induced by arterial oxygen partial pressure oscillations",
  author = "Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "2003",
  journal = "MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA    ",
  keywords = "ventilation",
  month = "Jun",
  number = "2",
  pages = "205--224",
  volume = "20",
}
@article{f20ea01df916fc2,
  title = "Efficient computations of gas transport in the respiratory tree",
  author = "Whiteley, JP and Gavaghan, DJ",
  year = "2003",
  issn = "02650746",
  journal = "MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA    ",
  keywords = "model",
  month = "Mar",
  number = "1",
  pages = "91--104",
  volume = "20",
}
@article{f20ea01df916ffc,
  title = "tidal ventilation model for oxygenation in respiratory failure",
  author = "Whiteley, JP and Farmery, AD and Gavaghan, DJ and Hahn, CEW",
  year = "2003",
  journal = "RESPIRATORY PHYSIOLOGY \& NEUROBIOLOGY    ",
  keywords = "pressure",
  number = "1",
  pages = "77--88",
  volume = "136",
}
@article{f20ea01df916ffa,
  title = "effect of diffusion in the respiratory tree on the alveolar amplitude response technique (AART)",
  author = "Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "2003",
  journal = "RESPIRATORY PHYSIOLOGY \& NEUROBIOLOGY    ",
  keywords = "co2",
  number = "1",
  pages = "81--96",
  volume = "137",
}
@article{f20ea01df916fc5,
  title = "Variation of venous admixture, SF6 shunt, Pa-O2, and the Pa-O2/F-IO2 ratio with F-IO2",
  author = "Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "2002",
  journal = "British Journal Of Anaesthesia",
  keywords = "hypoxemia",
  month = "Jun",
  number = "6",
  pages = "771--778",
  publisher = "Oxford University Press",
  volume = "88",
}
@article{f20ea01df916fc7,
  title = "Models for pattern formation in somitogenesis: a marriage of cellular and molecular biology",
  author = "Schnell, S. and Maini, PK and McInerney, D. and Gavaghan, DJ and Houston, P.",
  year = "2002",
  journal = "Comptes Rendus Biologies",
  keywords = "mouse embryos",
  month = "Mar",
  number = "3",
  pages = "179--189",
  publisher = "Elsevier Science",
  volume = "325",
}
@article{f20ea01df916fc6,
  title = "Microring electrodes: A computational study of transport-limited processes",
  author = "Brookes, BA and Gavaghan, DJ and Compton, RG",
  year = "2002",
  journal = "The Journal of Physical Chemistry B",
  keywords = "mesh",
  number = "18",
  pages = "4886--4896",
  publisher = "American Chemical Society",
  volume = "106",
}
@article{f20ea01df916fc4,
  title = "Finite element simulation of electrochemically reversible, quasi-reversible and irreversible linear sweep voltammetry at the wall tube electrode",
  author = "Klymenko, OV and Gavaghan, DJ and Harriman, KE and Compton, RG",
  year = "2002",
  issn = "00220728",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "kinetics",
  number = "1",
  pages = "25--31",
  publisher = "Elsevier Science",
  volume = "531",
}
@article{f20ea01df916fc3,
  title = "Pooling data for number needed to treat: no problems for apples",
  author = "Moore, R. Andrew and Gavaghan, David J. and Edwards, Jayne E. and Wiffen, Phillip and McQuay, Henry J.",
  year = "2002",
  journal = "BMC Medical Research Methodology - Latest Articles",
  keywords = "treatment outcome",
  publisher = "BioMed Central",
  volume = "2",
}
@article{f20ea01df916fcb,
  title = "Numerical simulation of alternating current linear sweep voltammetry at microdisc electrodes",
  author = "Gavaghan, DJ and Elton, DM and Bond, AM",
  year = "2001",
  journal = "Collection of Czechoslovak Chemical Communications",
  keywords = "digital-simulation",
  month = "Feb",
  number = "2",
  pages = "255--275",
  publisher = "Myris Trade Ltd",
  volume = "66",
}
@article{f20ea01df917003,
  title = "comparison of sinusoidal, square wave, sawtooth, and staircase forms of transient ramped voltammetry when a reversible process is analysed in the frequency domain",
  author = "Gavaghan, DJ and Elton, D. and Bond, AM",
  year = "2001",
  journal = "Journal of Electroanalytical Chemistry",
  number = "2",
  pages = "73--86",
  publisher = "Elsevier Science",
  volume = "513",
}
@article{f20ea01df917002,
  title = "effect of periodic modulation on the aperiodic current in linear-scan and cyclic voltammetries",
  author = "Gavaghan, DJ and Myland, JC and Oldham, KB",
  year = "2001",
  issn = "00220728",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "ac voltammetry",
  number = "1",
  pages = "2--9",
  publisher = "Elsevier Science",
  volume = "516",
}
@article{f20ea01df916fca,
  title = "Modelling inert gas exchange in tissue and mixed-venous blood return to the lungs",
  author = "Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "2001",
  journal = "JOURNAL OF THEORETICAL BIOLOGY    ",
  keywords = "muscle",
  number = "4",
  pages = "431--443",
  volume = "209",
}
@article{f20ea01df916fc9,
  title = "Analysis of ramped square-wave voltammetry in the frequency domain",
  author = "Gavaghan, DJ and Elton, D. and Oldham, KB and Bond, AM",
  year = "2001",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "electrochemistry",
  number = "1",
  pages = "1--15",
  publisher = "Elsevier Science",
  volume = "512",
}
@article{f20ea01df916fcf,
  title = "Adaptive finite element simulation of currents at microelectrodes to a guaranteed accuracy. ECE and EC2E mechanisms at channel microband electrodes",
  author = "Harriman, K. and Gavaghan, DJ and Houston, P. and Kay, D. and Suli, E.",
  year = "2000",
  journal = "Electrochemistry Communications",
  month = "Aug",
  number = "8",
  pages = "576--585",
  publisher = "Elsevier Science",
  volume = "2",
}
@article{f20ea01df916fd0,
  title = "An evaluation of homogeneity tests in meta-analyses in pain using simulations of individual patient data",
  author = "Gavaghan, DJ and Moore, RA and McQuay, HJ",
  year = "2000",
  journal = "Pain",
  keywords = "tables",
  month = "Apr",
  number = "3",
  pages = "415--424",
  publisher = "Elsevier Science",
  volume = "85",
}
@article{f20ea01df916fd1,
  title = "Adaptive finite element simulation of currents at microelectrodes to a guaranteed accuracy. Theory",
  author = "Harriman, K. and Gavaghan, DJ and Houston, P. and Suli, E.",
  year = "2000",
  issn = "13882481",
  journal = "Electrochemistry Communications",
  keywords = "post-processing approach",
  month = "Mar",
  number = "3",
  pages = "157--162",
  publisher = "Elsevier Science",
  volume = "2",
}
@article{f20ea01df917001,
  title = "tidal breathing model of the inert gas sinewave technique for inhomogeneous lungs",
  author = "Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "2000",
  journal = "Respiration Physiology",
  keywords = "washout",
  month = "Dec",
  number = "1",
  pages = "65--83",
  publisher = "Elsevier Science",
  volume = "124",
}
@article{f20ea01df916fce,
  title = "Extended electron transfer and the Frumkin correction",
  author = "Gavaghan, DJ and Feldberg, SW",
  year = "2000",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "gold",
  number = "1",
  pages = "103--110",
  publisher = "Elsevier Science",
  volume = "491",
}
@article{f20ea01df916fcd,
  title = "cell cycle model for somitogenesis: Mathematical formulation and numerical simulation",
  author = "Collier, JR and McInerney, D. and Schnell, S. and Maini, PK and Gavaghan, DJ and Houston, P. and Stern, CD",
  year = "2000",
  journal = "Journal of theoretical biology",
  keywords = "abnormalities",
  number = "3",
  pages = "305--316",
  publisher = "Elsevier Science",
  volume = "207",
}
@article{f20ea01df916fd4,
  title = "tidal breathing model for the multiple inert gas elimination technique",
  author = "Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "1999",
  journal = "JOURNAL OF APPLIED PHYSIOLOGY    ",
  keywords = "limits",
  month = "Jul",
  number = "1",
  pages = "161--169",
  volume = "87",
}
@article{f20ea01df916fd7,
  title = "Pulmonary blood flow measured by inspiratory inert gas concentration forcing oscillations",
  author = "Williams, EM and Sainsbury, MC and Sutton, L. and Xiong, L. and Black, AMS and Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "1998",
  journal = "RESPIRATION PHYSIOLOGY    ",
  keywords = "exchange",
  month = "Jul",
  number = "1",
  pages = "47--56",
  volume = "113",
}
@article{f20ea01df916fd6,
  title = "An exponentially expanding mesh ideally suited to the fast and efficient simulation of diffusion processes at microdisc electrodes. 3. Application to voltammetry",
  author = "Gavaghan, DJ",
  year = "1998",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "state",
  number = "1",
  pages = "25--35",
  publisher = "Elsevier Science",
  volume = "456",
}
@article{f20ea01df916fd5,
  title = "mathematical evaluation of the multiple breath nitrogen washout (MBNW) technique and the multiple inert gas elimination technique (MIGET)",
  author = "Whiteley, JP and Gavaghan, DJ and Hahn, CEW",
  year = "1998",
  journal = "JOURNAL OF THEORETICAL BIOLOGY    ",
  keywords = "limits",
  number = "4",
  pages = "517--539",
  volume = "194",
}
@article{f20ea01df916fd9,
  title = "Deriving dichotomous outcome measures from continuous data in randomised controlled trials of analgesics: Verification from independent data",
  author = "Moore, A. and McQuay, H. and Gavaghan, DJ",
  year = "1997",
  journal = "Pain",
  month = "Jan",
  number = "1",
  pages = "127--130",
  publisher = "Elsevier Science",
  volume = "69",
}
@article{f20ea01df916fda,
  title = "How accurate is your two-dimensional numerical simulation? .1. An introduction",
  author = "Gavaghan, DJ",
  year = "1997",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "algorithm",
  number = "1",
  pages = "147--158",
  publisher = "Elsevier Science",
  volume = "420",
}
@article{f20ea01df916fd8,
  title = "Analytical solution for the steady-state diffusion towards an inlaid disc microelectrode in a multi-layered medium",
  author = "Galceran, J. and Salvador, J. and Puy, J. and Cecilia, J. and Gavaghan, DJ",
  year = "1997",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "transport",
  number = "1",
  pages = "1--25",
  publisher = "Elsevier Science",
  volume = "440",
}
@article{f20ea01df916fdd,
  title = "Assessing the quality of reports of randomized clinical trials: Is blinding necessary?",
  author = "Jadad, AR and Moore, RA and Carroll, D. and Jenkinson, C. and Reynolds, DJM and Gavaghan, DJ and McQuay, HJ",
  year = "1996",
  journal = "Controlled Clinical Trials",
  keywords = "articles",
  month = "Feb",
  number = "1",
  pages = "1--12",
  publisher = "Elsevier Science",
  volume = "17",
}
@article{f20ea01df916fdb,
  title = "tidal breathing model of the forced inspired inert gas sinewave technique",
  author = "Gavaghan, DJ and Hahn, CEW",
  year = "1996",
  journal = "Respiration Physiology",
  keywords = "blood",
  month = "Nov",
  number = "2",
  pages = "209--221",
  publisher = "Elsevier Science",
  volume = "106",
}
@article{f20ea01df916fdc,
  title = "Numerical simulation of the time-dependent current to membrane-covered oxygen sensors .4. Experimental verification that the switch-on transient is non-Cottrellian for microdisc electrodes",
  author = "Sutton, L. and Gavaghan, DJ and Hahn, CEW",
  year = "1996",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "diffusion",
  number = "1",
  pages = "21--31",
  publisher = "Elsevier Science",
  volume = "408",
}
@article{f20ea01df916fde,
  title = "2-DIMENSIONAL IMPLEMENTATION OF THE FINITE-ELEMENT METHOD WITH SINGULARITY CORRECTION FOR DIFFUSION-LIMITED CURRENT AT AN UNSHIELDED DISC ELECTRODE",
  author = "GALCERAN, J. and GAVAGHAN, DJ and ROLLETT, JS",
  year = "1995",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "algorithm",
  number = "1",
  pages = "17--28",
  publisher = "Elsevier Science",
  volume = "394",
}
@article{f20ea01df916fdf,
  title = "EFFECT OF METHYLENE-BLUE ON THE VASODILATOR ACTION OF INHALED NITRIC-OXIDE IN HYPOXIC SHEEP",
  author = "YOUNG, JD and DYAR, OJ and XIONG, L. and ZHANG, J. and GAVAGHAN, D.",
  year = "1994",
  journal = "British Journal Of Anaesthesia",
  keywords = "responses",
  month = "Oct",
  number = "4",
  pages = "511--516",
  publisher = "Oxford University Press",
  volume = "73",
}
@article{f20ea01df916fe0,
  title = "NUMERICAL-SIMULATION OF THE TIME-DEPENDENT CURRENT TO MEMBRANE-COVERED OXYGEN SENSORS .2. THE APPROACH TO THE STEADY-STATE AND THE RESPONSE TO A STEP CHANGE FOR A MICROCATHODE",
  author = "GAVAGHAN, DJ and ROLLETT, JS and HAHN, CEW",
  year = "1993",
  issn = "00220728",
  journal = "Journal of Electroanalytical Chemistry",
  number = "1",
  pages = "1--14",
  publisher = "Elsevier Science",
  volume = "348",
}
@article{f20ea01df916fe1,
  title = "NUMERICAL-SIMULATION OF THE TIME-DEPENDENT CURRENT TO MEMBRANE-COVERED OXYGEN SENSORS .1. THE SWITCH-ON TRANSIENT",
  author = "GAVAGHAN, DJ and ROLLETT, JS and HAHN, CEW",
  year = "1992",
  journal = "Journal of Electroanalytical Chemistry",
  keywords = "diffusion-processes",
  number = "1",
  pages = "23--44",
  publisher = "Elsevier Science",
  volume = "325",
}
@article{f20ea01df916fe3,
  title = "ORAL MORPHINE IN CANCER PAIN - INFLUENCES ON MORPHINE AND METABOLITE CONCENTRATION",
  author = "MCQUAY, HJ and CARROLL, D. and FAURA, CC and GAVAGHAN, DJ and HAND, CW and MOORE, RA",
  year = "1990",
  issn = "00099236",
  journal = "Clinical Pharmacology \& Therapeutics",
  month = "Sep",
  number = "3",
  pages = "236--244",
  publisher = "Nature Publishing Group",
  volume = "48",
}
@article{f20ea01df916fe2,
  title = "CORRECTION OF BOUNDARY SINGULARITIES IN NUMERICAL-SIMULATION OF TIME-DEPENDENT DIFFUSION-PROCESSES AT UNSHIELDED DISK ELECTRODES",
  author = "GAVAGHAN, DJand ROLLETT, JS",
  year = "1990",
  issn = "00220728",
  journal = "Journal of Electroanalytical Chemistry",
  number = "1",
  pages = "1--14",
  publisher = "Elsevier Science",
  volume = "295",
}
@article{f20ea01df916fe2,
  title = "CORRECTION OF BOUNDARY SINGULARITIES IN NUMERICAL-SIMULATION OF TIME-DEPENDENT DIFFUSION-PROCESSES AT UNSHIELDED DISK ELECTRODES",
  author = "GAVAGHAN, DJ and ROLLETT, JS",
  year = "1990",
  issn = "00220728",
  journal = "Journal of Electroanalytical Chemistry",
  number = "1",
  pages = "1--14",
  publisher = "Elsevier Science",
  volume = "295",
}