Jeffrey Mak : Publications

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@article{mak2025learning,
  title = "Learning to utilize internal protein 3D nanoenvironment descriptors in predicting CRISPR--Cas9 off-target activity",
  author = "Mak, Jeffrey Kelvin and Bendandi, Artemi and Salim, Jos{\'e} Augusto and Mazoni, Ivan and de Moraes, Fabio Rogerio and Borro, Luiz and St{\"o}rtz, Florian and Rocchia, Walter and Neshich, Goran and Minary, Peter",
  year = "2025",
  journal = "NAR Genomics and Bioinformatics",
  number = "2",
  pages = "lqaf054",
  publisher = "Oxford University Press",
  volume = "7",
}

@article{Mak2025.10.08.681228,
  title = "DeepEmbCas9: Cas9 coevolution and sgRNA structural information for CRISPR-Cas9 cleavage activity prediction",
  author = "Mak, Jeffrey and Minary, Peter",
  year = "2025",
  journal = "bioRxiv",
  publisher = "Cold Spring Harbor Laboratory",
  url = "https://www.biorxiv.org/content/early/2025/10/08/2025.10.08.681228",
  doi = "10.1101/2025.10.08.681228",
}

@article{stortz2023picrispr,
  title = "piCRISPR: physically informed deep learning models for CRISPR/Cas9 off-target cleavage prediction",
  author = "St{\"o}rtz, Florian and Mak, Jeffrey K and Minary, Peter",
  year = "2023",
  journal = "Artificial Intelligence in the Life Sciences",
  pages = "100075",
  publisher = "Elsevier",
  volume = "3",
}

@article{mak2022comprehensive,
  title = "Comprehensive computational analysis of epigenetic descriptors affecting CRISPR-Cas9 off-target activity",
  author = "Mak, Jeffrey K and St{\"o}rtz, Florian and Minary, Peter",
  year = "2022",
  journal = "BMC genomics",
  number = "1",
  pages = "805",
  publisher = "Springer",
  volume = "23",
}