Nic Smith : Publications
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@article{Hemodynamics,
title = "Theoretical Modeling in Hemodynamics of Microcirculation",
author = "Lee J. and Smith N.P.",
year = "2008",
journal = "Microcirculation",
pages = "730-745",
volume = "15(8)",
}
@article{microcirculation,
title = "The role of theoretical modeling in microcirculation research",
author = "Secomb T.W. and Beard D.A and Frisbee J.C. and Smith N.P. and Pries A.R.",
year = "2008",
journal = "Microcirculation",
pages = "693-698",
volume = "15(8)",
}
@article{Threedimensional,
title = "Three-dimensional visualisation of cutaneous head and neck melanoma lymphoscintigraphy data",
author = "Reynolds H.M. and Smith N.P. and Uren R. and Thompson J.F. and Dunbar R.",
year = "2008",
journal = "Head and Neck",
}
@article{thermodynamic,
title = "A thermodynamic model of the cardiac sarcoplasmic/endoplasmic Ca2+ (SERCA) pump",
author = "Tran K. and Smith N.P and Loiselle D. and Crampin E.J.",
year = "2008",
journal = "Biophysical Journal",
}
@article{Metaanalysis,
title = "A Meta Analysis of the Physiome Paradigm with application to cardiac electrophysiology",
author = "Niederer S. A. and Fink M. and Noble D. and Smith N.P.",
year = "2008",
journal = "Experimental Physiology",
}
@article{Coupling,
title = "Coupling Contraction, Excitation, Ventricular and Coronary Blood Flow across scale and physics in the Heart",
author = "Lee J. and Niederer S.A. and Nordsletten D.A. and Smith N.P.",
year = "2008",
journal = "Phil Trans",
}
@article{fav2008,
title = "A Biophysically Based Model of Unitary Potential Activity in the Interstitial Cells of Cajal",
author = "R.A. Faville, A.J. Pullan, K.M Sanders, N.P. Smith",
year = "2008",
journal = "Biophys. J. ",
}
@article{2008terk,
title = "Using Physiome Standards to couple cellular functions for cardiac excitation-contraction",
author = "Terkildsen J., Niederer S.A., Hunter P.J., Crampin E.J., Smith N.P.",
year = "2008",
journal = "Exp. Physiol. ",
}
@article{2008loise,
title = "Energetic Consequences of Mechanical Loads",
author = "Loiselle D.S., Crampin E.J., Niederer S.A., Smith N.P., Barclay C.J.",
year = "2008",
journal = "Prog. Bio. Mol. Biol. ",
}
@article{2008Nprds,
title = "Triangulation of p-Order parametric Surfaces,",
author = "Nordsletten D.A. and Smith N.P.",
year = "2008",
journal = "Journal of Scientific Computing",
}
@article{Nied2008BJ,
title = "Modelling the Chloride dependent bicarbonate independent acid equivalent transporter in guinea pig ventricular myoctes",
author = "Niederer S. A., Wilson D. A., Swietach P., Smith N. P. and R. D. Vaughan-Jones",
year = "2008",
journal = "Biophys. J. ",
}
@article{KnowledgeCapture,
title = "Knowledge capture and the responsibility: Past and present",
author = "Smith, N. and Noble, D.",
year = "2008",
journal = "Prog Biophys Mol Biol",
note = "Editorial",
}
@article{AnImprovedNumericalMethod,
title = "An improved numerical method for strong coupling of excitation and contraction models in the heart",
author = "Niederer, S. A. and Smith, N. P.",
year = "2008",
journal = "Prog Biophys Mol Biol",
note = "Journal article",
}
@article{TheBalanceBetween,
title = "The balance between inactivation and activation of the Na+-K+ pump underlies the triphasic accumulation of extracellular K+ during myocardial ischemia",
author = "Terkildsen, J. R. and Crampin, E. J. and Smith, N. P.",
year = "2007",
journal = "Am J Physiol Heart Circ Physiol",
note = "Journal Article United States",
number = "5",
pages = "H3036-45",
volume = "293",
}
@article{ComputationalBiology,
title = "Computational biology of cardiac myocytes: proposed standards for the physiome",
author = "Smith, N. P. and Crampin, E. J. and Niederer, S. A. and Bassingthwaighte, J. B. and Beard, D. A.",
year = "2007",
journal = "J Exp Biol",
note = "Eb005825/eb/nibib Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't England",
number = "Pt 9",
pages = "1576-83",
volume = "210",
}
@article{MappingMelanoma,
title = "Mapping melanoma lymphoscintigraphy data onto a 3D anatomically based model",
author = "Reynolds, H. M. and Dunbar, P. R. and Uren, R. F. and Thompson, J. F. and Smith, N. P.",
year = "2007",
journal = "Ann Biomed Eng",
keywords = "Humans Imaging, Three-Dimensional Lymph Nodes/*pathology/radionuclide imaging Melanoma/*pathology/radionuclide imaging *Models, Anatomic Neoplasm Invasiveness Radionuclide Imaging Sentinel Lymph Node Biopsy Skin/pathology Skin Neoplasms/*pathology/radionuclide imaging",
note = "Journal Article Research Support, Non-U.S. Gov't United States",
number = "8",
pages = "1444-57",
volume = "35",
}
@article{LymphaticDrainagePatterns,
title = "Three-dimensional visualisation of lymphatic drainage patterns in patients with cutaneous melanoma",
author = "Reynolds, H. M. and Dunbar, P. R. and Uren, R. F. and Blackett, S. A. and Thompson, J. F. and Smith, N. P.",
year = "2007",
journal = "Lancet Oncol",
keywords = "Computer Simulation Humans Lymph Node Excision Lymphatic Metastasis Lymphatic Vessels/*radionuclide imaging Melanoma/*pathology/*radionuclide imaging Sentinel Lymph Node Biopsy Skin Neoplasms/*pathology/*radionuclide imaging",
note = "Evaluation Studies Journal Article Research Support, Non-U.S. Gov't England",
number = "9",
pages = "806-12",
volume = "8",
}
@article{AMathematicalModelOfSlowForce,
title = "A mathematical model of the slow force response to stretch in rat ventricular myocytes",
author = "Niederer, S. A. and Smith, N. P.",
year = "2007",
journal = "Biophys J",
keywords = "Animals *Biophysics *Models, Biological Myocytes, Cardiac/*physiology Rats Stress, Mechanical",
note = "R01-EB005825-01/EB/United States NIBIB Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't United States",
number = "11",
pages = "4030-44",
volume = "92",
}
@article{AutomaticSegmentation,
title = "Automatic segmentation of 3D micro-CT coronary vascular images",
author = "Lee, J. and Beighley, P. and Ritman, E. and Smith, N.",
year = "2007",
journal = "Med Image Anal",
note = "Journal Article Netherlands",
number = "6",
pages = "630-47",
volume = "11",
}
@article{EffectsofStenting,
title = "Effects of Stenting on Blood Flow in a Coronary Artery Model, Applied Bionics",
author = "Raghu, R. and Pullan, A.J. and Smith, N.P.",
year = "2006",
journal = "Applied Bionics",
number = "2",
pages = "77-86",
volume = "3",
}
@article{StructuralMorphology,
title = "Structural morphology of renal vasculature",
author = "Nordsletten, D. A. and Blackett, S. and Bentley, M. D. and Ritman, E. L. and Smith, N. P.",
year = "2006",
journal = "Am J Physiol Heart Circ Physiol",
keywords = "Animals Imaging, Three-Dimensional/*methods *Models, Anatomic Radiographic Image Interpretation, Computer-Assisted/*methods Rats Renal Artery/*anatomy & histology/*radiography Renal Veins/*anatomy & histology/*radiography",
note = "EB000305/EB/United States NIBIB R01-EB-00582501/EB/United States NIBIB Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. United States",
number = "1",
pages = "H296-309",
volume = "291",
}
@article{AQuantativeAnalysis,
title = "A quantitative analysis of cardiac myocyte relaxation: a simulation study",
author = "Niederer, S. A. and Hunter, P. J. and Smith, N. P.",
year = "2006",
journal = "Biophys J",
keywords = "Animals Calcium/*metabolism Calcium Signaling/*physiology Cells, Cultured Computer Simulation Elasticity Humans Isometric Contraction/physiology *Models, Biological Myocardial Contraction/*physiology Myocytes, Cardiac/*physiology Protein Binding Sarcomeres/*physiology Stress, Mechanical Troponin C/*metabolism",
note = "United Kingdom Wellcome Trust Journal Article Research Support, Non-U.S. Gov't United States",
number = "5",
pages = "1697-722",
volume = "90",
}
@article{CompuationalMultiScale,
title = "Computational multiscale modeling in the UPS physiome project: Modeling cardiac electromechanics",
author = "Nickerson, D. and Nash, M. and Nielsen, P. and Smith, N. and Hunter, P.",
year = "2006",
journal = "Ibm Journal of Research and Development",
keywords = "finite-element model long-qt syndrome mathematical-model propagation heart depolarization simulation muscle arrhythmias contraction",
note = "104NJ Times Cited:0 Cited References Count:52",
number = "6",
pages = "617-630",
volume = "50",
}
@article{ModellingSlowWave,
title = "Modelling slow wave activity in the small intestine",
author = "Lin, A. S. and Buist, M. L. and Smith, N. P. and Pullan, A. J.",
year = "2006",
journal = "J Theor Biol",
keywords = "Finite Element Analysis Gastrointestinal Motility/*physiology Humans Intestine, Small/anatomy & histology/*physiology Membrane Potentials/physiology *Models, Biological Muscle, Smooth/physiology",
note = "R01-DK64775/DK/United States NIDDK Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Netherlands",
number = "2",
pages = "356-62",
volume = "242",
}
@article{ComputationalSimulations,
title = "Computational simulations of the human magneto- and electroenterogram",
author = "Lin, A. S. and Buist, M. L. and Cheng, L. K. and Smith, N. P. and Pullan, A. J.",
year = "2006",
journal = "Ann Biomed Eng",
keywords = "Action Potentials/*physiology Animals Computer Simulation Diagnosis, Computer-Assisted/*methods Electrodiagnosis/*methods Gastrointestinal Motility/*physiology Humans Intestine, Small/*physiology Magnetics/diagnostic use *Models, Biological Muscle, Smooth/*physiology",
note = "R01-DK64775/DK/United States NIDDK Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't United States",
number = "8",
pages = "1322-31",
volume = "34",
}
@article{HodgkinHuxley,
title = "Hodgkin-Huxley type ion channel characterization: an improved method of voltage clamp experiment parameter estimation",
author = "Lee, J. and Smaill, B. and Smith, N.",
year = "2006",
journal = "J Theor Biol",
keywords = "Animals Cells/*metabolism *Computer Simulation *Data Interpretation, Statistical Ion Channels/*analysis *Patch-Clamp Techniques",
note = "Journal Article Research Support, Non-U.S. Gov't Netherlands",
number = "1",
pages = "123-34",
volume = "242",
}
@article{Acidosis,
title = "Acidosis in models of cardiac ventricular myocytes",
author = "Crampin, E. J. and Smith, N. P. and Langham, A. E. and Clayton, R. H. and Orchard, C. H.",
year = "2006",
journal = "Philos Transact A Math Phys Eng Sci",
keywords = "Acidosis/*physiopathology Action Potentials Animals *Calcium Signaling Cells, Cultured Computer Simulation Heart Ventricles/*chemistry/cytology/*physiopathology Humans Hydrogen-Ion Concentration Membrane Potentials *Models, Cardiovascular *Muscle Cells Ventricular Dysfunction, Left/*physiopathology",
note = "Journal Article Research Support, Non-U.S. Gov't Review England",
number = "1842",
pages = "1171-86",
volume = "364",
}
@article{ADynamicModel,
title = "A dynamic model of excitation-contraction coupling during acidosis in cardiac ventricular myocytes",
author = "Crampin, E. J. and Smith, N. P.",
year = "2006",
journal = "Biophys J",
keywords = "Acidosis/*metabolism/*pathology/physiopathology Animals Calcium/metabolism Cells, Cultured Disease Models, Animal Dogs Guinea Pigs Heart Ventricles/cytology/metabolism Hydrogen-Ion Concentration Myocardial Contraction/*physiology Myocytes, Cardiac/chemistry/*metabolism Patch-Clamp Techniques Sarcolemma/metabolism Sarcoplasmic Reticulum/metabolism/*pathology Sodium/antagonists & inhibitors/metabolism Sodium-Hydrogen Antiporter/antagonists & inhibitors *Thermodynamics Troponin C/metabolism",
note = "EB005825/EB/United States NIBIB United Kingdom Wellcome Trust Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't United States",
number = "9",
pages = "3074-90",
volume = "90",
}
@article{3DModels,
title = "Three-dimensional models of individual cardiac histoanatomy: tools and challenges",
author = "Burton, R. A. and Plank, G. and Schneider, J. E. and Grau, V. and Ahammer, H. and Keeling, S. L. and Lee, J. and Smith, N. P. and Gavaghan, D. and Trayanova, N. and Kohl, P.",
year = "2006",
journal = "Ann N Y Acad Sci",
keywords = "Animals Female Heart/*anatomy & histology Humans Magnetic Resonance Imaging *Models, Anatomic Rabbits",
note = "HL 63195/HL/United States NHLBI Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't United States",
pages = "301-19",
volume = "1080",
}
@article{VentricularMechanics,
title = "Computational Modeling of Ventricular Mechanics and Energetics",
author = "Smith, N.P. and Stevens, C. and Hunter, P.J.",
year = "2005",
journal = "Applied Mechanics Reviews",
pages = "77-90",
volume = "58",
}
@article{EfficiencyMuscleContraction,
title = "The efficiency of muscle contraction",
author = "Smith, N. P. and Barclay, C. J. and Loiselle, D. S.",
year = "2005",
journal = "Prog Biophys Mol Biol",
keywords = "Actomyosin/*physiology Animals Biomechanics *Energy Metabolism Humans *Models, Theoretical Muscle Contraction/*physiology *Thermodynamics",
note = "Journal Article Research Support, Non-U.S. Gov't Review England",
number = "1",
pages = "1-58",
volume = "88",
}
@article{NewDevelopments,
title = "New developments in a strongly coupled cardiac electromechanical model",
author = "Nickerson, D. and Smith, N. and Hunter, P.",
year = "2005",
journal = "Europace",
keywords = "*Computer Simulation Elasticity Finite Element Analysis Heart Conduction System/*physiology Heart Ventricles/*physiology Humans *Models, Cardiovascular Myocardial Contraction/physiology",
note = "Journal Article Research Support, Non-U.S. Gov't England European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology",
pages = "118-27",
volume = "7 Suppl 2",
}
@article{IntegrationFromProteins,
title = "Integration from proteins to organs: the IUPS Physiome Project",
author = "Hunter, P. and Smith, N. and Fernandez, J. and Tawhai, M.",
year = "2005",
journal = "Mech Ageing Dev",
keywords = "Animals Computational Biology *Computer Simulation Databases, Factual Heart/anatomy & histology/physiology Humans Lung/anatomy & histology/physiology *Models, Biological Musculoskeletal Physiology Musculoskeletal System/anatomy & histology *Software Systems Integration",
note = "Journal Article Review Ireland",
number = "1",
pages = "187-92",
volume = "126",
}
@article{ComputationalModellingHeart,
title = "Computational Modelling of the Heart",
author = "Smith, N.P. and Nickerson, D. and Crampin, E. J. and Hunter, P.J.",
year = "2004",
journal = "Acta Numerica",
pages = "371-431",
volume = "13",
}
@article{ModellingCellular,
title = "Modelling cellular and tissue function",
author = "Smith, N. P. and Crampin, E. J.",
year = "2004",
journal = "Prog Biophys Mol Biol",
keywords = "*Algorithms Animals *Cell Physiology *Computer Simulation Connective Tissue/*physiology Humans *Models, Biological",
note = "Editorial England",
number = "2-3",
pages = "117-9",
volume = "85",
}
@article{DevelopmentOfModels,
title = "Development of models of active ion transport for whole-cell modelling: cardiac sodium-potassium pump as a case study",
author = "Smith, N. P. and Crampin, E. J.",
year = "2004",
journal = "Prog Biophys Mol Biol",
keywords = "Adenosine Triphosphate/*metabolism Animals Biological Transport/physiology Computer Simulation Humans Ion Transport/physiology Membrane Potentials/*physiology *Models, Cardiovascular Myocytes, Cardiac/*physiology Potassium/*metabolism Reproducibility of Results Sensitivity and Specificity Sodium/*metabolism Sodium-Potassium-Exchanging ATPase/*physiology",
note = "Comparative Study Evaluation Studies Journal Article Research Support, Non-U.S. Gov't Validation Studies England",
number = "2-3",
pages = "387-405",
volume = "85",
}
@article{CoronaryBloodFlow,
title = "A computational study of the interaction between coronary blood flow and myocardial mechanics",
author = "Smith, N. P.",
year = "2004",
journal = "Physiol Meas",
keywords = "Biomechanics Coronary Vessels/*physiology Forecasting Heart/*physiology Hemodynamics Humans *Models, Anatomic Myocardial Contraction/*physiology Pressure Regional Blood Flow Ventricular Function, Left",
note = "Journal Article England",
number = "4",
pages = "863-77",
volume = "25",
}
@article{GivingFormTo,
title = "Giving form to the function of the heart: embedding cellular models in an anatomical framework",
author = "Smith, N. and Hunter, P.",
year = "2004",
journal = "Jpn J Physiol",
keywords = "Animals Computer Simulation Heart/*anatomy & histology/*physiology *Models, Anatomic *Models, Cardiovascular Myocardium/*metabolism",
note = "Journal Article Review Japan",
number = "6",
pages = "541-4",
volume = "54",
}
@article{MultiScaleModelling,
title = "Multi-scale modelling and the IUPS physiome project",
author = "Crampin, E. J. and Smith, N. P. and Hunter, P. J.",
year = "2004",
journal = "J Mol Histol",
keywords = "Animals Biochemistry *Cell Physiology Heart/anatomy & histology/physiology *Models, Biological *Models, Theoretical Stochastic Processes",
note = "Journal Article Netherlands",
number = "7",
pages = "707-14",
volume = "35",
}
@article{ComputationalPhysiology,
title = "Computational physiology and the Physiome Project",
author = "Crampin, E. J. and Halstead, M. and Hunter, P. and Nielsen, P. and Noble, D. and Smith, N. and Tawhai, M.",
year = "2004",
journal = "Exp Physiol",
keywords = "*Biophysics *Computer Simulation Heart/physiology Humans Lung/physiology *Models, Biological",
note = "Journal Article Research Support, Non-U.S. Gov't Review England",
number = "1",
pages = "1-26",
volume = "89",
}
@article{AlteredTWave,
title = "Altered T wave dynamics in a contracting cardiac model",
author = "Smith, N. P. and Buist, M. L. and Pullan, A. J.",
year = "2003",
journal = "J Cardiovasc Electrophysiol",
keywords = "Action Potentials/physiology Algorithms Animals Anisotropy Calcium/physiology Cell Membrane/physiology Dogs *Electrocardiography Electrophysiology Heart/*physiology Humans Kinetics Membrane Potentials/physiology Models, Biological Models, Statistical Myocardial Contraction/*physiology Myocardium/metabolism Troponin C/physiology",
note = "Journal Article Research Support, Non-U.S. Gov't United States",
number = "10 Suppl",
pages = "S203-9",
volume = "14",
}
@article{FromSarcomereToCell,
title = "From sarcomere to cell: an efficient algorithm for linking mathematical models of muscle contraction",
author = "Smith, N. P.",
year = "2003",
journal = "Bull Math Biol",
keywords = "Adenosine Triphosphate/metabolism Algorithms Computer Simulation *Models, Biological Muscle Contraction/*physiology Muscle, Skeletal/cytology/*physiology Sarcomeres/*physiology",
note = "Journal Article United States",
number = "6",
pages = "1141-62",
volume = "65",
}
@article{AnatomicalFramework,
title = "New developments in an anatomical framework for modeling cardiac ischemia",
author = "Smith, N. and Stevens, C. and Pullan, A. and Hunter, P. and Mulquiney, P.",
year = "2003",
journal = "International Journal of Bifurcation and Chaos",
keywords = "mathematical model cardiac ischemia anatomically based heart ventricular myocardium heart cell",
note = "779UV Times Cited:1 Cited References Count:19",
number = "12",
pages = "3717-3722",
volume = "13",
}
@article{CardiacElectricalActivity,
title = "Cardiac electrical activity--from heart to body surface and back again",
author = "Pullan, A. J. and Buist, M. L. and Sands, G. B. and Cheng, L. K. and Smith, N. P.",
year = "2003",
journal = "J Electrocardiol",
keywords = "Algorithms Body Surface Potential Mapping *Electrocardiography Electrophysiology Heart Ventricles/physiology Humans Models, Cardiovascular Myocardial Ischemia/*physiopathology",
note = "Journal Article United States",
pages = "63-7",
volume = "36 Suppl",
}
@article{AnatomicallyBasedModel,
title = "An Anatomically Based Model of Transient Coronary Blood Flow in the Heart",
author = "Smith, N.P. and Pullan, A.J. and Hunter, P.J.",
year = "2002",
journal = "SIAM Journal of Applied Mathematics",
number = "3",
pages = "990-1018",
volume = "62",
}
@article{CellToOrgan,
title = "Mathematical modelling of the heart: cell to organ",
author = "Smith, N. P. and Mulquiney, P. J. and Nash, M. P. and Bradley, C. P. and Nickerson, D. P. and Hunter, P. J.",
year = "2002",
journal = "Chaos Solitons & Fractals",
keywords = "enzyme-kinetic equations 2,3-bisphosphoglycerate metabolism ca2+ dynamics generation currents",
note = "517YQ Times Cited:17 Cited References Count:26",
number = "8",
pages = "1613-1621",
volume = "13",
}
@article{AnalysisOfCoronary,
title = "Analysis of Coronary Blood Flow Interaction with Myocardial Mechanics Based on Anatomical Models",
author = "Smith, N.P. and Kassab, G.S.",
year = "2001",
journal = "Philos Transact A Math Phys Eng Sci",
pages = "1159-1172",
volume = "359",
}
@article{CardiacCellularElectroMechanics,
title = "A model of cardiac cellular electromechanics",
author = "Nickerson, D. P. and Smith, N. P. and Hunter, P. J.",
year = "2001",
journal = "Philosophical Transactions of the Royal Society of London Series a-Mathematical Physical and Engineering Sciences",
keywords = "cardiac electromechanics mathematical modelling cellular mechanics intracellular calcium sarcomere-length muscle force contraction tension titin deactivation transients mechanisms",
note = "443TM Times Cited:24 Cited References Count:40",
number = "1783",
pages = "1159-1172",
volume = "359",
}
@article{MathematicalModelling,
title = "Mathematical modelling of the ischaemic heart",
author = "Mulquiney, P. J. and Smith, N. P. and Clarke, K. and Hunter, P. J.",
year = "2001",
journal = "Nonlinear Analysis-Theory Methods & Applications",
keywords = "heart ischaemia mathematical modelling ischemia",
note = "Part 1 466BX Times Cited:5 Cited References Count:18",
number = "1",
pages = "235-244",
volume = "47",
}
@article{GenerationOf,
title = "Generation of an anatomically based geometric coronary model",
author = "Smith, N. P. and Pullan, A. J. and Hunter, P. J.",
year = "2000",
journal = "Ann Biomed Eng",
keywords = "Biomedical Engineering Coronary Circulation/*physiology Coronary Vessels/*anatomy & histology Heart/anatomy & histology/physiology Humans Models, Anatomic *Models, Cardiovascular",
note = "Journal Article Research Support, Non-U.S. Gov't United states",
number = "1",
pages = "14-25",
volume = "28",
}