Rafel Bordas : Publications
Click here to download all publications in a single bibtex file
@article{bordas/journal.pone.0144105,
title = "Development and Analysis of Patient-Based Complete Conducting Airways Models",
author = "Bordas, Rafel AND Lefevre, Christophe AND Veeckmans, Bart AND Pitt-Francis, Joe AND Fetita, Catalin AND Brightling, Christopher E. AND Kay, David AND Siddiqui, Salman AND Burrowes, Kelly S.",
year = "2015",
journal = "PLoS ONE",
month = "12",
number = "12",
pages = "e0144105",
publisher = "Public Library of Science",
url = "http://dx.doi.org/10.1371%2Fjournal.pone.0144105",
volume = "10",
doi = "10.1371/journal.pone.0144105",
}
@article{Berger2015A2222,
title = "Stabilized lowest-order finite element approximation for linear three-field poroelasticity",
author = "Berger, L.a , Bordas, R.a , Kay, D.a , Tavener, S.b",
year = "2015",
affiliation = "Department of Computer Science, University of Oxford, Wolfson Building, Parks Road, Oxford, United Kingdom; Department of Mathematics, Colorado State University, Fort Collins, CO, United States",
journal = "SIAM Journal on Scientific Computing",
note = "cited By 0",
number = "5",
pages = "A2222-A2245",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84945931993&partnerID=40&md5=dc1bab1bb7d9b3d8fda2484ab3fb36db",
volume = "37",
doi = "10.1137/15M1009822",
}
@article{Knapp2015,
title = "Ten simple rules for a successful cross-disciplinary collaboration",
author = "Knapp, B.a , Bardenet, R.a , Bernabeu, M.O.b c , Bordas, R.d , Bruna, M.d e , Calderhead, B.f , Cooper, J.d , Fletcher, A.G.e , Groen, D.b , Kuijper, B.c g , Lewis, J.c , McInerny, G.d , Minssen, T.h i j , Osborne, J.d , Paulitschke, V.k , Pitt-Francis, J.d , Todoric, J.l , Yates, C.A.m , Gavaghan, D.d , Deane, C.M.a",
year = "2015",
affiliation = "Department of Statistics, University of Oxford, Oxford, United Kingdom; Centre for Computational Science, Department of Chemistry, University College London, London, United Kingdom; Centre for Mathematics, Physics and Engineering in the Life Sciences and Experimental Biology, University College London, London, United Kingdom; Department of Computer Science, University of Oxford, Oxford, United Kingdom; Wolfson Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom; Department of Mathematics, Imperial College London, London, United Kingdom; Department of Genetics, Evolution and Environment, University College London, London, United Kingdom; Centre for Information & Innovation Law, University of Copenhagen, Copenhagen, Denmark; Guest Scholar, Harvard Law School, Cambridge, MA, United States; Visiting Research Fellow, University of Oxford, Oxford, United Kingdom; Department of Dermatology, Medical University of Vienna, Vienna, Austria; Laboratory of Gene Regulation and Signal Transduction, Departments of Pharmacology and Pathology, University of California, San Diego, CA, United States; Department of Mathematical Sciences, University of Bath, Bath, United Kingdom",
journal = "PLoS Computational Biology",
note = "cited By 0",
number = "4",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84929470498&partnerID=40&md5=93589a4cea08e05ff22dfc8f15d654a5",
volume = "11",
doi = "10.1371/journal.pcbi.1004214",
}
@article{Kim2015,
title = "Dynamic flow characteristics in normal and asthmatic lungs",
author = "Kim, M.a , Bordas, R.a , Vos, W.c , Hartley, R.A.d , Brightling, C.E.d , Kay, D.a , Grau, V.b , Burrowes, K.S.a",
year = "2015",
affiliation = "Department of Computer Science University of Oxford Oxford UK; Institute of Biomedical Engineering, Department of Engineering Science and Oxford e-Research Centre University of Oxford Oxford UK; FluidDA Groeningenlei 132 Kontich 2550 Belgium; Institute for Lung Health, Department of Infection, Immunity and Inflammation University Hospitals of Leicester Leicester UK",
journal = "International Journal for Numerical Methods in Biomedical Engineering",
note = "cited By 0; Article in Press",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84933054899&partnerID=40&md5=b9a6585da588f374bac3f8bd1f931b53",
doi = "10.1002/cnm.2730",
}
@article{Berger2015,
title = "A poroelastic model coupled to a fluid network with applications in lung modelling",
author = "Berger, L.a , Bordas, R.a , Burrowes, K.a , Grau, V.b , Tavener, S.c , Kay, D.a",
year = "2015",
affiliation = "Department of Computer Science University of Oxford Wolfson Building Parks, Road OX1 3QD, Oxford UK; Institute of Biomedical Engineering, Department of Engineering Science Old Road Campus Research Building, University of Oxford Headington Oxford OX3 7DQ UK; Department of Mathematics Colorado State University Weber Building, Fort Collins CO 80523 USA",
journal = "International Journal for Numerical Methods in Biomedical Engineering",
note = "cited By 0; Article in Press",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84937467776&partnerID=40&md5=4335577163c86fdd0fb2a44218db3d57",
doi = "10.1002/cnm.2731",
}
@article{Carapella2014,
title = "Quantitative study of the effect of tissue microstructure on contraction in a computational model of rat left ventricle",
author = "Carapella, V.a , Bordas, R.a , Pathmanathan, P.a , Lohezic, M.b , Schneider, J.E.b , Kohl, P.c , Burrage, K.a , Grau, V.d",
year = "2014",
affiliation = "Department of Computer Science, University of Oxford, Oxford, United Kingdom; Radcliffe Department of Medicine, Division of Cardiovascular Medicine, University of Oxford, Oxford, United Kingdom; National Heart and Lung Institute, Imperial College, London, United Kingdom; Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, United Kingdom",
journal = "PLoS ONE",
note = "cited By 7",
number = "4",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84898781532&partnerID=40&md5=1573f2c140e8d7ddf7215ccb7bbfc739",
volume = "9",
doi = "10.1371/journal.pone.0092792",
}
@article{Mirams2013,
title = "Chaste: An Open Source C++ Library for Computational Physiology and Biology",
author = "Mirams, G.R.a , Arthurs, C.J.a , Bernabeu, M.O.b c , Bordas, R.a , Cooper, J.a , Corrias, A.d , Davit, Y.e , Dunn, S.-J.f , Fletcher, A.G.g , Harvey, D.G.a , Marsh, M.E.h , Osborne, J.M.a , Pathmanathan, P.a i , Pitt-Francis, J.a , Southern, J.j , Zemzemi, N.k , Gavaghan, D.J.a",
year = "2013",
affiliation = "Computational Biology, Department of Computer Science, University of Oxford, Oxford, United Kingdom; CoMPLEX, Maths and Physical Sciences, University College London, London, United Kingdom; Centre for Computational Science, University College London, London, United Kingdom; Department of Bioengineering, National University of Singapore, Singapore, Singapore; Oxford Centre for Collaborative Applied Mathematics, Mathematical Institute, University of Oxford, Oxford, United Kingdom; Computational Science Laboratory, Microsoft Research, Cambridge, United Kingdom; Centre for Mathematical Biology, Mathematical Institute, University of Oxford, Oxford, United Kingdom; Department of Mathematics and Statistics, University of Saskatchewan, Saskatoon, Canada; Food and Drug Administration, Silver Spring, MD, United States; Fujitsu Laboratories of Europe, Hayes Park, London, United Kingdom; CARMEN project, INRIA Bordeaux Sud-Ouest, Talence, France",
journal = "PLoS Computational Biology",
note = "cited By 53",
number = "3",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84875998970&partnerID=40&md5=2767b6292790c8ff2f34dd211513a210",
volume = "9",
doi = "10.1371/journal.pcbi.1002970",
}
@article{Carapella201346,
title = "Effect of fibre orientation optimisation in an electromechanical model of left ventricular contraction in rat",
author = "Carapella, V.a , Bordas, R.a , Pathmanathan, P.a , Schneider, J.E.b , Kohl, P.a c , Burrage, K.a , Grau, V.a d",
year = "2013",
affiliation = "Department of Computer Science, University of Oxford, United Kingdom; Department of Cardiovascular Medicine, University of Oxford, United Kingdom; National Heart and Lung Institute, Imperial College London, United Kingdom; Department of Engineering Science, Oxford e-Research Centre, University of Oxford, United Kingdom",
journal = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",
note = "cited By 2",
pages = "46-53",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84879809829&partnerID=40&md5=f70472c5db7fffeb8460a2fb749df534",
volume = "7945 LNCS",
doi = "10.1007/978-3-642-38899-6_6",
}
@article{Morris201311780,
title = "A comparison of fully automated methods of data analysis and computer assisted heuristic methods in an electrode kinetic study of the pathologically variable [Fe(CN)6]3-/4- process by AC voltammetry",
author = "Morris, G.P.a , Simonov, A.N.b , Mashkina, E.A.b , Bordas, R.c , Gillow, K.a , Baker, R.E.a , Gavaghan, D.J.c , Bond, A.M.b",
year = "2013",
affiliation = "Mathematical Institute, University of Oxford, Radcliffe Observatory Quarter, Woodstock Road, Oxford, OX2 6GG, United Kingdom; School of Chemistry, Monash University, Clayton, VIC 3800, Australia; Department of Computer Science, University of Oxford, Wolfson Building, Parks Road, Oxford, OX1 3QD, United Kingdom",
journal = "Analytical Chemistry",
note = "cited By 6",
number = "24",
pages = "11780-11787",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84890530912&partnerID=40&md5=b8ecd95ae1e8eab7790da5c492e80055",
volume = "85",
doi = "10.1021/ac4022105",
}
@article{Bordas20121618,
title = "A bidomain model of the ventricular specialized conduction system of the heart",
author = "Bordas, R.M.a , Gillow, K.b , Gavaghan, D.a , Rodriguez, B.a , Kay, D.a",
year = "2012",
affiliation = "Computational Biology Group, Department of Computer Science, University of Oxford, Oxford OX1 3QD, United Kingdom; Numerical Analysis Group, Oxford University Mathematical Institute, Oxford OX1 3LB, United Kingdom",
journal = "SIAM Journal on Applied Mathematics",
note = "cited By 3",
number = "5",
pages = "1618-1643",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84868244885&partnerID=40&md5=9f272b9e8d06ff9e5aafdb27cc748845",
volume = "72",
doi = "10.1137/11082796X",
}
@article{Bordas201190,
title = "Rabbit-specific ventricular model of cardiac electrophysiological function including specialized conduction system",
author = "Bordas, R.a , Gillow, K.c , Lou, Q.e , Efimov, I.R.e , Gavaghan, D.a , Kohl, P.a d , Grau, V.b , Rodriguez, B.a",
year = "2011",
affiliation = "Department of Computer Science, University of Oxford, Wolfson Building, Parks Road, Oxford OX1 3QD, United Kingdom; Oxford e-Research Centre, 7 Keble Road, Oxford OX2 3QF, United Kingdom; Oxford University Mathematical Institute, 24-29 St Giles, Oxford OX1 3LB, United Kingdom; National Heart and Lung Institute (Imperial College London), Heart Science Centre, Harefield Hospital, Harefield, Middlesex UB9 6JH, United Kingdom; Washington University in St Louis, Department of Biomedical Engineering, St Louis, MO 62130-4899, United States",
journal = "Progress in Biophysics and Molecular Biology",
note = "cited By 28",
number = "1",
pages = "90-100",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-80053584229&partnerID=40&md5=f3811767e3dca5f26070c2e92eb54fa3",
volume = "107",
doi = "10.1016/j.pbiomolbio.2011.05.002",
}
@article{Bordas20106793,
title = "Integrated approach for the study of anatomical variability in the cardiac Purkinje system: from high resolution MRI to electrophysiology simulation.",
author = "Bordas, R., Grau, V., Burton, R.B., Hales, P., Schneider, J.E., Gavaghan, D., Kohl, P., Rodriguez, B.",
year = "2010",
affiliation = "Oxford University, Computing Laboratory, Wolfson Building, Parks Road, OX1 3QD, UK.",
journal = "Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference",
note = "cited By 1",
pages = "6793-6796",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-84903863673&partnerID=40&md5=99950198fa98d77cd5f132ba4f54d047",
}
@article{3940,
title = "A numerical guide to the solution of the bidomain equations of cardiac electrophysiology",
author = "Pathmanathan, Pras and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Garny, Alan and Pitt-Francis, Joe M and Whiteley, Jonathan P and Gavaghan, David J",
year = "2010",
journal = "Progress in biophysics and molecular biology",
number = "2-3",
pages = "136--155",
publisher = "Pergamon",
volume = "102",
doi = "10.1016/j.pbiomolbio.2010.05.006",
}
@conference{Bordas20106793,
title = "Integrated approach for the study of anatomical variability in the cardiac Purkinje system: From high resolution MRI to electrophysiology simulation",
author = "Bordas, R.a , Grau, V.b , Burton, R.A.B.c , Hales, P.d , Schneider, J.E.d , Gavaghan, D.a , Kohl, P.c , Rodriguez, B.a",
year = "2010",
affiliation = "Oxford University Computing Laboratory, Wolfson Building, Parks Road, Oxford OX1 3QD, United Kingdom; Oxford E-Research Centre, 7 Keble Road, Oxford OX1 3QF, United Kingdom; Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3PT, United Kingdom; Department of Cardiovascular Medicine, University of Oxford, Oxford OX3 7BN, United Kingdom",
journal = "2010 Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC'10",
note = "cited By 6",
pages = "6793-6796",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-78650805529&partnerID=40&md5=6ca5bce3d8254bd305936750f5987c71",
doi = "10.1109/IEMBS.2010.5625979",
}
@article{Bernabeu20091907,
title = "Chaste: Incorporating a novel multi-scale spatial and temporal algorithm into a large-scale open source library",
author = "Bernabeu, M.O.a , Bordas, R.a , Pathmanathan, P.a , Pitt-Francis, J.a , Cooper, J.a , Garny, A.b , Gavaghan, D.J.a , Rodriguez, B.a , Southern, J.A.a c , Whiteley, J.P.a",
year = "2009",
affiliation = "Oxford University, Computing Laboratory, University of Oxford, Parks Road, Oxford 0X1 3QD, United Kingdom; Department of Physiology, Anatomy and Genetics, University of Oxford, Sherrington Building, Parks Road, Oxford 0X1 3PT, United Kingdom; Fujitsu Laboratories of Europe Ltd., Hayes, Middlesex UB4 8FE, United Kingdom",
journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
note = "cited By 21",
number = "1895",
pages = "1907-1930",
url = "http://www.scopus.com/inward/record.url?eid=2-s2.0-67149147023&partnerID=40&md5=c09fba6a796e9371d78512773e427409",
volume = "367",
doi = "10.1098/rsta.2008.0309",
}
@article{ChasteCPC09,
title = "Chaste: a test-driven approach to software development for biological modelling",
author = "Pitt-Francis, Joe and Pathmanathan, Pras and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Fletcher, Alexander G and Mirams, Gary R and Murray, Philip and Osborne, James M and Walter, Alex and others",
year = "2009",
journal = "Computer Physics Communications",
number = "12",
pages = "2452--2471",
publisher = "North-Holland",
volume = "180",
doi = "10.1016/j.cpc.2009.07.019",
}
@article{HPC,
title = "Simulation of cardiac electrophysiology on next-generation high-performance computers",
author = "Bordas, Rafel and Carpentieri, Bruno and Fotia, Giorgio and Maggio, Fabio and Nobes, Ross and Pitt-Francis, Joe and Southern, James",
year = "2009",
journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
number = "1895",
pages = "1951--1969",
publisher = "The Royal Society London",
volume = "367",
doi = "10.1098/rsta.2008.0298",
}