Joe Pitt-Francis : Publications

Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue

John Walmsley‚ Gary Mirams‚ Joe M Pitt−Francis‚ Blanca Rodriguez and Kevin Burrage

In Journal of Theoretical Biology. Vol. 365. Pages 325−336. 2015.

Details about Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue | BibTeX data for Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue | DOI (10.1016/j.jtbi.2014.10.029)

Ten simple rules for effective computational research

J.M. Osborne‚ M.O. Bernabeu‚ M. Bruna‚ B. Calderhead‚ J. Cooper‚ N. Dalchau‚ S−J. Dunn‚ A.G. Fletcher‚ R. Freeman‚ D. Groen‚ B. Knapp‚ G.J. McInerny‚ G.R. Mirams‚ J. Pitt−Francis‚ B. Sengupta‚ D.W. Wright‚ C.A. Yates‚ Gavaghan D.J.‚ S. Emmott and C. Deane

In PLoS Computational Biology. Vol. 10. No. 3. Pages e1003506. 2014.

Details about Ten simple rules for effective computational research | BibTeX data for Ten simple rules for effective computational research | DOI (10.1371/journal.pcbi.1003506)

Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation

Miguel O Bernabeu‚ James Southern‚ Nicholas Wilson‚ Peter Strazdins‚ Jonathan Cooper and Joe Pitt−Francis

In International Journal of High Performance Computing Applications. 2013.

Details about Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | BibTeX data for Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | DOI (10.1177/1094342012474997)

Chaste: an open source C++ library for computational physiology and biology

G.R. Mirams‚ C.J. Arthurs‚ M.O. Bernabeu‚ R. Bordas‚ J. Cooper‚ A. Corrias‚ Y. Davit‚ S−J. Dunn‚ A.G. Fletcher‚ D.G. Harvey‚ M.E. Marsh‚ J. M. Osborne‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Southern‚ N. Zemzemi and D.J. Gavaghan

In PLoS Computational Biology. Vol. 9. No. 3. Pages e1002970. 2013.

Details about Chaste: an open source C++ library for computational physiology and biology | BibTeX data for Chaste: an open source C++ library for computational physiology and biology | DOI (10.1371/journal.pcbi.1002970) | Link to Chaste: an open source C++ library for computational physiology and biology

Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials

N Zemzemi‚ MO Bernabeu‚ J Saiz‚ J Cooper‚ P Pathmanathan‚ GR Mirams‚ J Pitt−Francis and B Rodriguez

In British Journal of Pharmacology. Vol. 168. No. 3. Pages 718−733. 2013.

Details about Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | BibTeX data for Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | DOI (10.1111/j.1476-5381.2012.02200.x)

Stochasticity in Action Potential duration Enhances Dispersion of Repolarisation at Fast Pacing Rates

John Walmsley‚ Kevin Burrage‚ Joe M. Pitt−Francis‚ Gary R. Mirams and Blanca Rodriguez

Vol. 102. No. 3. Pages 592a−593a. 2012.

Details about Stochasticity in Action Potential duration Enhances Dispersion of Repolarisation at Fast Pacing Rates | BibTeX data for Stochasticity in Action Potential duration Enhances Dispersion of Repolarisation at Fast Pacing Rates | DOI (10.1016/j.bpj.2011.11.3230)

Simulating cardiac electrophysiology using anisotropic mesh adaptivity

J Pitt−Francis J Southern GJ Gorman MD Piggott PE Farrell MO Bernabeu

In Journal of computational science. No. 1. Pages 82−88. 2010.

Details about Simulating cardiac electrophysiology using anisotropic mesh adaptivity | BibTeX data for Simulating cardiac electrophysiology using anisotropic mesh adaptivity

Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations

D. Kay M. Bernabeu P. Pathmanathan J. Pitt−Francis

In Transactions of Biomedical Engineering. Vol. 57. No. 12. Pages 2806−15. 2010.

Details about Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | BibTeX data for Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | DOI (10.1109/TBME.2010.2078817)

A numerical guide to the solution of the bidomain equations of cardiac electrophysiology

D.J.a Pathmanathan P.a Bernabeu M.O.a Bordas R.a Cooper J.a Garny A.b Pitt−Francis J.M.a Whiteley J.P.a Gavaghan

In Progress in Biophysics and Molecular Biology. Vol. 102. No. 2−3. Pages 136−155. 2010.

cited By 33

Details about A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | BibTeX data for A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | DOI (10.1016/j.pbiomolbio.2010.05.006) | Link to A numerical guide to the solution of the bidomain equations of cardiac electrophysiology

High−throughput cardiac science on the Grid

Details about High−throughput cardiac science on the Grid | BibTeX data for High−throughput cardiac science on the Grid

Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library

M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley

In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009.

Details about Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | BibTeX data for Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | DOI (10.1098/rsta.2008.0309)

Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models

Gavaghan D Bernabeu MO Corrias A Pitt−Francis J Rodriguez B Bethwaite B Enticott C Garic S Peachey T Tan J Abramson D

In Computers in Cardiology. 2009.

Details about Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models | BibTeX data for Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models

Chaste: A test−driven approach to software development for biological modelling

D.J.a c Pitt−Francis J.a Pathmanathan P.a Bernabeu M.O.a Bordas R.a Cooper J.a Fletcher A.G.b c Mirams G.R.d Murray P.b Osborne J.M.a c Walter A.b Chapman S.J.b Garny A.d van Leeuwen I.M.M.e Maini P.K.b c Rodríguez B.a Waters S.L.b Whiteley J.P.a b Byrne H.M.f Gavaghan

In Computer Physics Communications. Vol. 180. No. 12. Pages 2452−2471. 2009.

cited By 102

Details about Chaste: A test−driven approach to software development for biological modelling | BibTeX data for Chaste: A test−driven approach to software development for biological modelling | DOI (10.1016/j.cpc.2009.07.019) | Link to Chaste: A test−driven approach to software development for biological modelling

A computational study of discrete mechanical tissue models

P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman

In Physical Biology. Vol. 6. No. 3. 2009.

Details about A computational study of discrete mechanical tissue models | BibTeX data for A computational study of discrete mechanical tissue models | DOI (10.1088/1478-3975/6/3/036001)

Simulation of cardiac electrophysiology on next−generation high−performance computers

J.c Bordas R.a Carpentieri B.b Fotia G.b Maggio F.b Nobes R.c Pitt−Francis J.a Southern

In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 367. No. 1895. Pages 1951−1969. 2009.

cited By 19

Details about Simulation of cardiac electrophysiology on next−generation high−performance computers | BibTeX data for Simulation of cardiac electrophysiology on next−generation high−performance computers | DOI (10.1098/rsta.2008.0298) | Link to Simulation of cardiac electrophysiology on next−generation high−performance computers

An integrative computational model for intestinal tissue renewal

I.M.M. van Leeuwen‚ G.R. Mirams‚ A. Walter‚ A. Fletcher‚ P. Murray‚ J. Osborne‚ S. Varma‚ S.J. Young‚ J. Cooper‚ B. Doyle‚ J. Pitt−Francis‚ L. Momtahan‚ P. Pathmanathan‚ J.P. Whiteley‚ S.J. Chapman‚ D.J. Gavaghan‚ O.E. Jensen‚ J.R. King‚ P.K. Maini‚ S.L. Waters and H.M. Byrne

In Cell Proliferation. Vol. 42. Pages 617−636. 2009.

Details about An integrative computational model for intestinal tissue renewal | BibTeX data for An integrative computational model for intestinal tissue renewal | DOI (10.1111/j.1365-2184.2009.00627.x)

High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

Rodriguez B Bernabeu MO Bishop MJ Pitt−Francis J Gavaghan DJ Grau V

In Computers in Cardiology. 2008.

Details about High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution | BibTeX data for High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

Multi−scale computational modelling in biology and physiology.

James Southern‚ Joe Pitt−Francis‚ Jonathan Whiteley‚ Daniel Stokeley‚ Hiromichi Kobashi‚ Ross Nobes‚ Yoshimasa Kadooka and David Gavaghan

In Progress in Biophysics and Molecular Biology. Vol. 96. No. 1−3. Pages 60−89. 2008.

Details about Multi−scale computational modelling in biology and physiology. | BibTeX data for Multi−scale computational modelling in biology and physiology.

Chaste: using agile programming techniques to develop computational biology software

J. Pitt−Francis‚ M.O. Bernabeu‚ J. Cooper‚ A. Garny‚ L. Momtahan‚ J. Osborne‚ P. Pathmanathan‚ B. Rodriguez‚ J.P. Whiteley and D.J. Gavaghan

In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 366. No. 1878. Pages 3111–3136. 2008.

Details about Chaste: using agile programming techniques to develop computational biology software | BibTeX data for Chaste: using agile programming techniques to develop computational biology software | DOI (10.1098/rsta.2008.0096)