Joe Pitt-Francis : Publications

A mathematical framework for the emergence of winners and losers in cell competition

Thomas F Pak‚ Joe Pitt−Francis and Ruth E Baker

In Journal of Theoretical Biology. Vol. 577. Pages 111666. 2024.

Details about A mathematical framework for the emergence of winners and losers in cell competition | BibTeX data for A mathematical framework for the emergence of winners and losers in cell competition

Structural Features of Microvascular Networks Trigger Blood Flow Oscillations

Yaron Ben−Ami‚ George W Atkinson‚ Joe M Pitt−Francis‚ Philip K Maini and Helen M Byrne

In Bulletin of Mathematical Biology. Vol. 84. No. 8. Pages 85. 2022.

Details about Structural Features of Microvascular Networks Trigger Blood Flow Oscillations | BibTeX data for Structural Features of Microvascular Networks Trigger Blood Flow Oscillations

Dependence of cell−free−layer width on rheological parameters: Combining empirical data on flow separation at microvascular bifurcations with geometrical considerations

Jakub Köry‚ Philip K Maini‚ Joe M Pitt−Francis and Helen M Byrne

In Physical Review E. Vol. 105. No. 1. Pages 014414. 2022.

Details about Dependence of cell−free−layer width on rheological parameters: Combining empirical data on flow separation at microvascular bifurcations with geometrical considerations | BibTeX data for Dependence of cell−free−layer width on rheological parameters: Combining empirical data on flow separation at microvascular bifurcations with geometrical considerations

A DNA−structured mathematical model of cell−cycle progression in cyclic hypoxia

Giulia L Celora‚ Samuel B Bader‚ Ester M Hammond‚ Philip K Maini‚ Joe M Pitt−Francis and Helen M Byrne

In Journal of Theoretical Biology. Vol. 545. Pages 111104. 2022.

Details about A DNA−structured mathematical model of cell−cycle progression in cyclic hypoxia | BibTeX data for A DNA−structured mathematical model of cell−cycle progression in cyclic hypoxia

Chaste: cancer‚ heart and soft tissue environment

Fergus R Cooper‚ Ruth E Baker‚ Miguel O Bernabeu‚ Rafel Bordas‚ Louise Bowler‚ Alfonso Bueno−Orovio‚ Helen M Byrne‚ Valentina Carapella‚ Louie Cardone−Noott‚ Cooper Jonatha and others

In Journal of Open Source Software. Vol. 5. No. 47. 2020.

Details about Chaste: cancer‚ heart and soft tissue environment | BibTeX data for Chaste: cancer‚ heart and soft tissue environment

Pakman: a modular‚ efficient and portable tool for approximate Bayesian inference

Thomas Pak‚ Ruth Baker and Joe Pitt−Francis

In Journal of Open Source Software. Vol. 5. No. 47. 2020.

Details about Pakman: a modular‚ efficient and portable tool for approximate Bayesian inference | BibTeX data for Pakman: a modular‚ efficient and portable tool for approximate Bayesian inference

Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation

Miguel O Bernabeu‚ Jakub Köry‚ James A Grogan‚ Bostjan Markelc‚ Albert Beardo‚ Mayeul d�Avezac‚ Romain Enjalbert‚ Jakob Kaeppler‚ Nicholas Daly‚ James Hetherington and others

In Proceedings of the National Academy of Sciences. Vol. 117. No. 45. Pages 27811–27819. 2020.

Details about Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation | BibTeX data for Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation

Cooperation‚ competition and antibiotic resistance in bacterial colonies

Isabel Frost‚ William PJ Smith‚ Sara Mitri‚ Alvaro San Millan‚ Yohan Davit‚ James M Osborne‚ Joe M Pitt−Francis‚ R Craig MacLean and Kevin R Foster

In The ISME journal. Vol. 12. No. 6. Pages 1582–1593. 2018.

Details about Cooperation‚ competition and antibiotic resistance in bacterial colonies | BibTeX data for Cooperation‚ competition and antibiotic resistance in bacterial colonies

The importance of geometry in the corneal micropocket angiogenesis assay

James A Grogan‚ Anthony J Connor‚ Joe M Pitt−Francis‚ Philip K Maini and Helen M Byrne

In PLoS computational biology. Vol. 14. No. 3. Pages e1006049. 2018.

Details about The importance of geometry in the corneal micropocket angiogenesis assay | BibTeX data for The importance of geometry in the corneal micropocket angiogenesis assay

Bayesian calibration‚ validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial

Joe Collis‚ Anthony J Connor‚ Marcin Paczkowski‚ Pavitra Kannan‚ Joe Pitt−Francis‚ Helen M Byrne and Matthew E Hubbard

In Bulletin of mathematical biology. Vol. 79. Pages 939–974. 2017.

Details about Bayesian calibration‚ validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial | BibTeX data for Bayesian calibration‚ validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial

Microvessel chaste: an open library for spatial modeling of vascularized tissues

James A Grogan‚ Anthony J Connor‚ Bostjan Markelc‚ Ruth J Muschel‚ Philip K Maini‚ Helen M Byrne and Joe M Pitt−Francis

In Biophysical Journal. Vol. 112. No. 9. Pages 1767–1772. 2017.

Details about Microvessel chaste: an open library for spatial modeling of vascularized tissues | BibTeX data for Microvessel chaste: an open library for spatial modeling of vascularized tissues

Cell morphology drives spatial patterning in microbial communities

William PJ Smith‚ Yohan Davit‚ James M Osborne‚ Wook Kim‚ Kevin R Foster and Joe M Pitt−Francis

In Proceedings of the National Academy of Sciences. Vol. 114. No. 3. Pages E280–E286. 2017.

Details about Cell morphology drives spatial patterning in microbial communities | BibTeX data for Cell morphology drives spatial patterning in microbial communities

Comparing individual−based approaches to modelling the self−organization of multicellular tissues

James M Osborne‚ Alexander G Fletcher‚ Joe M Pitt−Francis‚ Philip K Maini and David J Gavaghan

In PLoS computational biology. Vol. 13. No. 2. Pages e1005387. 2017.

Details about Comparing individual−based approaches to modelling the self−organization of multicellular tissues | BibTeX data for Comparing individual−based approaches to modelling the self−organization of multicellular tissues

Predicting the influence of microvascular structure on tumor response to radiotherapy

James A Grogan‚ Bostjan Markelc‚ Anthony J Connor‚ Ruth J Muschel‚ Joe M Pitt−Francis‚ Philip K Maini and Helen M Byrne

In IEEE Transactions on Biomedical Engineering. Vol. 64. No. 3. Pages 504–511. 2016.

Details about Predicting the influence of microvascular structure on tumor response to radiotherapy | BibTeX data for Predicting the influence of microvascular structure on tumor response to radiotherapy

VENI‚ VIDI‚ Voronoi: Attacking Viruses with Spherical Voronoi Diagrams

Tyler Reddy‚ Ross Hemsley‚ Edd Edmondson‚ Nikolai Nowaczyk‚ Joe Pitt−Francis and Mark SP Sansom

In Biophysical Journal. Vol. 110. No. 3. Pages 36a. 2016.

Details about VENI‚ VIDI‚ Voronoi: Attacking Viruses with Spherical Voronoi Diagrams | BibTeX data for VENI‚ VIDI‚ Voronoi: Attacking Viruses with Spherical Voronoi Diagrams

Development and analysis of patient−based complete conducting airways models

Rafel Bordas‚ Christophe Lefevre‚ Bart Veeckmans‚ Joe Pitt−Francis‚ Catalin Fetita‚ Christopher E Brightling‚ David Kay‚ Salman Siddiqui and Kelly S Burrowes

In PloS one. Vol. 10. No. 12. Pages e0144105. 2015.

Details about Development and analysis of patient−based complete conducting airways models | BibTeX data for Development and analysis of patient−based complete conducting airways models

Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer

Simone Rubinacci‚ Alex Graudenzi‚ Giulio Caravagna‚ Giancarlo Mauri‚ James Osborne‚ Joe Pitt−Francis and Marco Antoniotti

In Cancer informatics. Vol. 14. Pages CIN–S19965. 2015.

Details about Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer | BibTeX data for Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer

An integrated approach to quantitative modelling in angiogenesis research

Anthony J Connor‚ Radosław P Nowak‚ Erica Lorenzon‚ Markus Thomas‚ Frank Herting‚ Stefan Hoert‚ Tom Quaiser‚ Eliezer Shochat‚ Joe Pitt−Francis‚ Jonathan Cooper and others

In Journal of The Royal Society Interface. Vol. 12. No. 110. Pages 20150546. 2015.

Details about An integrated approach to quantitative modelling in angiogenesis research | BibTeX data for An integrated approach to quantitative modelling in angiogenesis research

A parallel implementation of an off−lattice individual−based model of multicellular populations

Daniel G Harvey‚ Alexander G Fletcher‚ James M Osborne and Joe Pitt−Francis

In Computer Physics Communications. Vol. 192. Pages 130–137. 2015.

Details about A parallel implementation of an off−lattice individual−based model of multicellular populations | BibTeX data for A parallel implementation of an off−lattice individual−based model of multicellular populations

Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue

John Walmsley‚ Gary R Mirams‚ Joe Pitt−Francis‚ Blanca Rodriguez and Kevin Burrage

In Journal of theoretical biology. Vol. 365. Pages 325–336. 2015.

Details about Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue | BibTeX data for Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue | DOI (10.1016/j.jtbi.2014.10.029)

Ten simple rules for a successful cross−disciplinary collaboration

Bernhard Knapp‚ Rémi Bardenet‚ Miguel O Bernabeu‚ Rafel Bordas‚ Maria Bruna‚ Ben Calderhead‚ Jonathan Cooper‚ Alexander G Fletcher‚ Derek Groen‚ Bram Kuijper and others

2015.

Details about Ten simple rules for a successful cross−disciplinary collaboration | BibTeX data for Ten simple rules for a successful cross−disciplinary collaboration

Ten simple rules for effective computational research

Miguel Bernabeu‚ Maria Bruna‚ Jonathan Cooper‚ Sara−Jane Dunn‚ Alexander Fletcher‚ David Gavaghan‚ Greg McInerny‚ Gary Mirams‚ James Osborne and Joe Pitt−Francis

In PLoS Computational Biology. Vol. 10. No. 3. 2014.

Details about Ten simple rules for effective computational research | BibTeX data for Ten simple rules for effective computational research

Clinical validation of a CT−based impulse oscillometry model

Rafel Bordas‚ Sherif Gonem‚ Christophe Lefevre‚ Bart Veeckmans‚ Ruth Hartley‚ Joe Pitt−Francis‚ Catalin Fetita‚ Chris Brightling‚ John Owers−Bradley‚ David Kay and others

In European Respiratory Journal. Vol. 44. No. Suppl 58. 2014.

Details about Clinical validation of a CT−based impulse oscillometry model | BibTeX data for Clinical validation of a CT−based impulse oscillometry model

Relationship between heterogeneous bronchoconstriction and impulse oscillometry resistance: A simulation study

Rafel Bordas‚ Sherif Gonem‚ Wim Vos‚ Ruth Hartley‚ Joe Pitt−Francis‚ Jan De Backer‚ Chris Brightling‚ John Owers−Bradley‚ David Kay‚ Salman Siddiqui and others

In European Respiratory Journal. Vol. 44. No. Suppl 58. 2014.

Details about Relationship between heterogeneous bronchoconstriction and impulse oscillometry resistance: A simulation study | BibTeX data for Relationship between heterogeneous bronchoconstriction and impulse oscillometry resistance: A simulation study

Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2

Arash Sadrieh‚ Luke Domanski‚ Joe Pitt−Francis‚ Stefan A Mann‚ Emily C Hodkinson‚ Chai−Ann Ng‚ Matthew D Perry‚ John A Taylor‚ David Gavaghan‚ Rajesh N Subbiah and others

In Nature communications. Vol. 5. No. 1. Pages 5069. 2014.

Details about Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2 | BibTeX data for Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2

Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation

Miguel O Bernabeu‚ James Southern‚ Nicholas Wilson‚ Peter Strazdins‚ Jonathan Cooper and Joe Pitt−Francis

In The International journal of high performance computing applications. Vol. 28. No. 1. Pages 13–32. 2014.

Details about Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | BibTeX data for Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation

Ten simple rules for effective computational research

James M Osborne‚ Miguel O Bernabeu‚ Maria Bruna‚ Ben Calderhead‚ Jonathan Cooper‚ Neil Dalchau‚ Sara−Jane Dunn‚ Alexander G Fletcher‚ Robin Freeman‚ Derek Groen and others

In PLoS Computational Biology. Vol. 10. No. 3. Pages e1003506. 2014.

Details about Ten simple rules for effective computational research | BibTeX data for Ten simple rules for effective computational research | DOI (10.1371/journal.pcbi.1003506)

Simulating tumour vasculature at multiple scales

James A Grogan‚ Philip K Maini‚ Joe Pitt−Francis and Helen M Byrne

In Proceedings of the 2014 6th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation−The CHIC Project Workshop (IARWISOCI). Pages 1–4. IEEE. 2014.

Details about Simulating tumour vasculature at multiple scales | BibTeX data for Simulating tumour vasculature at multiple scales

Hydrodynamic dispersion within porous biofilms

Yohan Davit‚ Helen Byrne‚ J Osborne‚ Joe Pitt−Francis‚ David Gavaghan and Michel Quintard

In Physical Review E. Vol. 87. No. 1. Pages 012718. 2013.

Details about Hydrodynamic dispersion within porous biofilms | BibTeX data for Hydrodynamic dispersion within porous biofilms

Validity of the Cauchy−Born rule applied to discrete cellular−scale models of biological tissues

Yohan Davit‚ James M Osborne‚ HM Byrne‚ David Gavaghan and Joe Pitt−Francis

In Physical Review E. Vol. 87. No. 4. Pages 042724. 2013.

Details about Validity of the Cauchy−Born rule applied to discrete cellular−scale models of biological tissues | BibTeX data for Validity of the Cauchy−Born rule applied to discrete cellular−scale models of biological tissues

Computational assessment of drug−induced effects on the electrocardiogram: from ion channel to body surface potentials

Nejib Zemzemi‚ Miguel O Bernabeu‚ Javier Saiz‚ Jonathan Cooper‚ Pras Pathmanathan‚ Gary R Mirams‚ Joe Pitt−Francis and Blanca Rodriguez

In British journal of pharmacology. Vol. 168. No. 3. Pages 718–733. 2013.

Details about Computational assessment of drug−induced effects on the electrocardiogram: from ion channel to body surface potentials | BibTeX data for Computational assessment of drug−induced effects on the electrocardiogram: from ion channel to body surface potentials

Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation

Miguel O Bernabeu‚ James Southern‚ Nicholas Wilson‚ Peter Strazdins‚ Jonathan Cooper and Joe Pitt−Francis

In International Journal of High Performance Computing Applications. 2013.

Details about Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | BibTeX data for Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | DOI (10.1177/1094342012474997)

Chaste: an open source C++ library for computational physiology and biology

Gary R Mirams‚ Christopher J Arthurs‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alberto Corrias‚ Yohan Davit‚ Sara−Jane Dunn‚ Alexander G Fletcher‚ Daniel G Harvey and others

In PLoS computational biology. Vol. 9. No. 3. Pages e1002970. 2013.

Details about Chaste: an open source C++ library for computational physiology and biology | BibTeX data for Chaste: an open source C++ library for computational physiology and biology | DOI (10.1371/journal.pcbi.1002970)

Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials

N Zemzemi‚ MO Bernabeu‚ J Saiz‚ J Cooper‚ P Pathmanathan‚ GR Mirams‚ J Pitt−Francis and B Rodriguez

In British Journal of Pharmacology. Vol. 168. No. 3. Pages 718−733. 2013.

Details about Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | BibTeX data for Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | DOI (10.1111/j.1476-5381.2012.02200.x)

Stochasticity in action potential duration enhances dispersion of repolarisation at fast pacing rates

John Walmsley‚ Kevin Burrage‚ Joe M Pitt−Francis‚ Gary R Mirams and Blanca Rodriguez

In Biophysical Journal. Vol. 102. No. 3. Pages 592a–593a. 2012.

Details about Stochasticity in action potential duration enhances dispersion of repolarisation at fast pacing rates | BibTeX data for Stochasticity in action potential duration enhances dispersion of repolarisation at fast pacing rates

Solute transport within porous biofilms: diffusion or dispersion?

Y Davit‚ H Byrne‚ J Osborne‚ J Pitt−Francis‚ D Gavaghan and M Quintard

2012.

Details about Solute transport within porous biofilms: diffusion or dispersion? | BibTeX data for Solute transport within porous biofilms: diffusion or dispersion?

Anisotropic mesh adaptivity for cardiac electrophysiology

James Southern‚ Gerard J Gorman‚ MD Piggott‚ Patrick E Farrell‚ Miguel O Bernabeu and Joe Pitt−Francis

In Procedia Computer Science. Vol. 1. No. 1. Pages 935–944. 2010.

Details about Anisotropic mesh adaptivity for cardiac electrophysiology | BibTeX data for Anisotropic mesh adaptivity for cardiac electrophysiology

Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations

Miguel O Bernabeu‚ Pras Pathmanathan‚ Joe Pitt−Francis and David Kay

In IEEE transactions on biomedical engineering. Vol. 57. No. 12. Pages 2806–2815. 2010.

Details about Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations | BibTeX data for Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations

Simulating cardiac electrophysiology using anisotropic mesh adaptivity

James Southern‚ Gerard J Gorman‚ MD Piggott‚ Patrick E Farrell‚ Miguel O Bernabeu and Joe Pitt−Francis

In Journal of computational science. Vol. 1. No. 2. Pages 82–88. 2010.

Details about Simulating cardiac electrophysiology using anisotropic mesh adaptivity | BibTeX data for Simulating cardiac electrophysiology using anisotropic mesh adaptivity

High−throughput cardiac science on the Grid

David Abramson‚ Miguel O Bernabeu‚ Blair Bethwaite‚ Kevin Burrage‚ Alberto Corrias‚ Colin Enticott‚ Slavisa Garic‚ David Gavaghan‚ Tom Peachey‚ Joe Pitt−Francis and others

In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 368. No. 1925. Pages 3907–3923. 2010.

Details about High−throughput cardiac science on the Grid | BibTeX data for High−throughput cardiac science on the Grid

Simulating cardiac electrophysiology using anisotropic mesh adaptivity

J Pitt−Francis J Southern GJ Gorman MD Piggott PE Farrell MO Bernabeu

In Journal of computational science. No. 1. Pages 82−88. 2010.

Details about Simulating cardiac electrophysiology using anisotropic mesh adaptivity | BibTeX data for Simulating cardiac electrophysiology using anisotropic mesh adaptivity

Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations

D. Kay M. Bernabeu P. Pathmanathan J. Pitt−Francis

In Transactions of Biomedical Engineering. Vol. 57. No. 12. Pages 2806−15. 2010.

Details about Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | BibTeX data for Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | DOI (10.1109/TBME.2010.2078817)

A numerical guide to the solution of the bidomain equations of cardiac electrophysiology

Pras Pathmanathan‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alan Garny‚ Joe M Pitt−Francis‚ Jonathan P Whiteley and David J Gavaghan

In Progress in biophysics and molecular biology. Vol. 102. No. 2−3. Pages 136–155. 2010.

Details about A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | BibTeX data for A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | DOI (10.1016/j.pbiomolbio.2010.05.006)

High−throughput cardiac science on the Grid

Details about High−throughput cardiac science on the Grid | BibTeX data for High−throughput cardiac science on the Grid

Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library

M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley

In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009.

Details about Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | BibTeX data for Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | DOI (10.1098/rsta.2008.0309)

An integrative computational model for intestinal tissue renewal

Jon Chapman‚ Jonathan Cooper‚ Alexander Fletcher‚ David Gavaghan‚ Philip Maini‚ Gary Mirams‚ James Osborne‚ Pras Pathmanathan‚ Joe Pitt−Francis and Jonathan Whiteley

In Cell Proliferation. Vol. 42. 2009.

Details about An integrative computational model for intestinal tissue renewal | BibTeX data for An integrative computational model for intestinal tissue renewal

A computational study of discrete mechanical tissue models

P Pathmanathan‚ Jonathan Cooper‚ Alexander Fletcher‚ Gary Mirams‚ P Murray‚ J Osborne‚ Joe Pitt−Francis‚ Alex Walter and SJ Chapman

In Physical biology. Vol. 6. No. 3. Pages 036001. 2009.

Details about A computational study of discrete mechanical tissue models | BibTeX data for A computational study of discrete mechanical tissue models

Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models

Gavaghan D Bernabeu MO Corrias A Pitt−Francis J Rodriguez B Bethwaite B Enticott C Garic S Peachey T Tan J Abramson D

In Computers in Cardiology. 2009.

Details about Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models | BibTeX data for Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models

Chaste: a test−driven approach to software development for biological modelling

Joe Pitt−Francis‚ Pras Pathmanathan‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alexander G Fletcher‚ Gary R Mirams‚ Philip Murray‚ James M Osborne‚ Alex Walter and others

In Computer Physics Communications. Vol. 180. No. 12. Pages 2452–2471. 2009.

Details about Chaste: a test−driven approach to software development for biological modelling | BibTeX data for Chaste: a test−driven approach to software development for biological modelling | DOI (10.1016/j.cpc.2009.07.019)

A computational study of discrete mechanical tissue models

P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman

In Physical Biology. Vol. 6. No. 3. 2009.

Details about A computational study of discrete mechanical tissue models | BibTeX data for A computational study of discrete mechanical tissue models | DOI (10.1088/1478-3975/6/3/036001)

Simulation of cardiac electrophysiology on next−generation high−performance computers

Rafel Bordas‚ Bruno Carpentieri‚ Giorgio Fotia‚ Fabio Maggio‚ Ross Nobes‚ Joe Pitt−Francis and James Southern

In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 367. No. 1895. Pages 1951–1969. 2009.

Details about Simulation of cardiac electrophysiology on next−generation high−performance computers | BibTeX data for Simulation of cardiac electrophysiology on next−generation high−performance computers | DOI (10.1098/rsta.2008.0298)

An integrative computational model for intestinal tissue renewal

Van Leeuwen‚ Ingeborg MM‚ GR Mirams‚ Alex Walter‚ A Fletcher‚ P Murray‚ J Osborne‚ S Varma‚ SJ Young‚ J Cooper‚ B Doyle and others

In Cell proliferation. Vol. 42. No. 5. Pages 617–636. 2009.

Details about An integrative computational model for intestinal tissue renewal | BibTeX data for An integrative computational model for intestinal tissue renewal | DOI (10.1111/j.1365-2184.2009.00627.x)

Grid computing simulations of ion channel block effects on the ECG using 3D anatomically−based models

MO Bernabeu‚ A Corrias‚ J Pitt−Francis‚ B Rodriguez‚ B Bethwaite‚ C Enticott‚ S Garic‚ T Peachey‚ J Tan‚ D Abramson and others

In 2009 36th Annual Computers in Cardiology Conference (CinC). Pages 213–216. IEEE. 2009.

Details about Grid computing simulations of ion channel block effects on the ECG using 3D anatomically−based models | BibTeX data for Grid computing simulations of ion channel block effects on the ECG using 3D anatomically−based models

High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

Rodriguez B Bernabeu MO Bishop MJ Pitt−Francis J Gavaghan DJ Grau V

In Computers in Cardiology. 2008.

Details about High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution | BibTeX data for High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

Multi−scale computational modelling in biology and physiology

James Southern‚ Joe Pitt−Francis‚ Jonathan Whiteley‚ Daniel Stokeley‚ Hiromichi Kobashi‚ Ross Nobes‚ Yoshimasa Kadooka and David Gavaghan

In Progress in biophysics and molecular biology. Vol. 96. No. 1−3. Pages 60–89. 2008.

Details about Multi−scale computational modelling in biology and physiology | BibTeX data for Multi−scale computational modelling in biology and physiology

Chaste: using agile programming techniques to develop computational biology software

Joe Pitt−Francis‚ Miguel O Bernabeu‚ Jonathan Cooper‚ Alan Garny‚ Lee Momtahan‚ James Osborne‚ Pras Pathmanathan‚ Blanca Rodriguez‚ Jonathan P Whiteley and David J Gavaghan

In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 366. No. 1878. Pages 3111–3136. 2008.

Details about Chaste: using agile programming techniques to develop computational biology software | BibTeX data for Chaste: using agile programming techniques to develop computational biology software | DOI (10.1098/rsta.2008.0096)

High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

MO Bernabeu‚ MJ Bishop‚ J Pitt−Francis‚ DJ Gavaghan‚ V Grau and B Rodriguez

In 2008 Computers in Cardiology. Pages 721–724. IEEE. 2008.

Details about High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution | BibTeX data for High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

Integrative Biology�the challenges of developing a collaborative research environment for heart and cancer modelling

Sharon Lloyd‚ Dave Gavaghan‚ Andrew Simpson‚ Matthew Mascord‚ Clint Seneurine‚ Geoff Williams‚ Joe Pitt−Francis‚ David Boyd‚ Damian Mac Randal‚ Lakshmi Sastry and others

In Future Generation Computer Systems. Vol. 23. No. 3. Pages 457–465. 2007.

Details about Integrative Biology�the challenges of developing a collaborative research environment for heart and cancer modelling | BibTeX data for Integrative Biology�the challenges of developing a collaborative research environment for heart and cancer modelling

Multimodal imaging techniques for the extraction of detailed geometrical and physiological information for use in multi−scale models of colorectal cancer and treatment of individual patients

Joe Pitt−Francis‚ Dan Chen‚ Mark Slaymaker‚ Andrew Simpson‚ Michael Brady‚ Ingeborg Van Leeuwen‚ Fiona Reddington‚ Phil Quirke‚ Gina Brown and David Gavaghan

In Computational and Mathematical Methods in Medicine. Vol. 7. No. 2−3. Pages 177–188. 2006.

Details about Multimodal imaging techniques for the extraction of detailed geometrical and physiological information for use in multi−scale models of colorectal cancer and treatment of individual patients | BibTeX data for Multimodal imaging techniques for the extraction of detailed geometrical and physiological information for use in multi−scale models of colorectal cancer and treatment of individual patients

Enabling computer models of the heart for high−performance computers and the grid

Joe Pitt−Francis‚ Alan Garny and David Gavaghan

In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 364. No. 1843. Pages 1501–1516. 2006.

Details about Enabling computer models of the heart for high−performance computers and the grid | BibTeX data for Enabling computer models of the heart for high−performance computers and the grid

Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts

Ivana Drobnjak‚ David Gavaghan‚ Endre Süli‚ Joe Pitt−Francis and Mark Jenkinson

In Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine. Vol. 56. No. 2. Pages 364–380. 2006.

Details about Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts | BibTeX data for Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts

Gathering requirements for an Integrative Biology project

David Gavaghan‚ Jonathan Whiteley‚ Joe Pitt−Francis‚ Mark Slaymaker‚ David Boyd‚ Damian Mac Randal‚ Kerstin Kleese van Dam and Lakshmi Sastry

In Proc. UK e−Science All Hands Meeting. Pages 99–105. 2004.

Details about Gathering requirements for an Integrative Biology project | BibTeX data for Gathering requirements for an Integrative Biology project

Directions in the use and computation of proximity queries

Stephen Cameron‚ Tristam Fenton−May and Joe Pitt−Francis

In Geometric Modeling and Processing. Theory and Applications. GMP 2002. Proceedings. Pages 43–52. IEEE. 2002.

Details about Directions in the use and computation of proximity queries | BibTeX data for Directions in the use and computation of proximity queries

Using oxsim for path planning

Stephen Cameron and Joe Pitt−Francis

In Journal of Robotic Systems. Vol. 18. No. 8. Pages 421–431. 2001.

Details about Using oxsim for path planning | BibTeX data for Using oxsim for path planning

Geometric Modelling and Robotics

Stephen Cameron and Joe Pitt−Francis

In International Journal of Shape Modeling. Vol. 6. No. 02. Pages 145–164. 2000.

Details about Geometric Modelling and Robotics | BibTeX data for Geometric Modelling and Robotics

Motion planning for real problems

S Cameron and J Pitt−Francis

In Advanced robotics: beyond 2000 (Birmingham‚ 27 April−1 May 1998). 1998.

Details about Motion planning for real problems | BibTeX data for Motion planning for real problems

Automatic generation of sphere hierarchies from cad data

Joe Pitt−Francis and R Feathertone

In Proceedings. 1998 IEEE International Conference on Robotics and Automation (Cat. No. 98CH36146). Vol. 1. Pages 324–329. IEEE. 1998.

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The importance of geometry in the corneal micropocket assay

James A Grogan‚ Anthony J Connor‚ Joe M Pitt−Francis‚ Philip K Maini and Helen M Byrne

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An integrated approach to quantitative modelling in angiogenesis research

Tom Quaizer‚ Eliezer Shochat‚ Joe Pitt−Francis‚ Jonathan Cooper‚ Philip K Maini and Helen M Byrne

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Comparison of parallel solution techniques for the Eikonal equation

Joe Pitt−Francis and James Anderson

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