Joe Pitt-Francis : Publications
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[1]
Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue
John Walmsley‚ Gary Mirams‚ Joe M Pitt−Francis‚ Blanca Rodriguez and Kevin Burrage
In Journal of Theoretical Biology. Vol. 365. Pages 325−336. 2015.
Details about Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue | BibTeX data for Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue | DOI (10.1016/j.jtbi.2014.10.029)
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[2]
Ten simple rules for effective computational research
J.M. Osborne‚ M.O. Bernabeu‚ M. Bruna‚ B. Calderhead‚ J. Cooper‚ N. Dalchau‚ S−J. Dunn‚ A.G. Fletcher‚ R. Freeman‚ D. Groen‚ B. Knapp‚ G.J. McInerny‚ G.R. Mirams‚ J. Pitt−Francis‚ B. Sengupta‚ D.W. Wright‚ C.A. Yates‚ Gavaghan D.J.‚ S. Emmott and C. Deane
In PLoS Computational Biology. Vol. 10. No. 3. Pages e1003506. 2014.
Details about Ten simple rules for effective computational research | BibTeX data for Ten simple rules for effective computational research | DOI (10.1371/journal.pcbi.1003506)
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[3]
Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation
Miguel O Bernabeu‚ James Southern‚ Nicholas Wilson‚ Peter Strazdins‚ Jonathan Cooper and Joe Pitt−Francis
In International Journal of High Performance Computing Applications. 2013.
Details about Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | BibTeX data for Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | DOI (10.1177/1094342012474997)
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[4]
Chaste: an open source C++ library for computational physiology and biology
G.R. Mirams‚ C.J. Arthurs‚ M.O. Bernabeu‚ R. Bordas‚ J. Cooper‚ A. Corrias‚ Y. Davit‚ S−J. Dunn‚ A.G. Fletcher‚ D.G. Harvey‚ M.E. Marsh‚ J. M. Osborne‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Southern‚ N. Zemzemi and D.J. Gavaghan
In PLoS Computational Biology. Vol. 9. No. 3. Pages e1002970. 2013.
Details about Chaste: an open source C++ library for computational physiology and biology | BibTeX data for Chaste: an open source C++ library for computational physiology and biology | DOI (10.1371/journal.pcbi.1002970) | Link to Chaste: an open source C++ library for computational physiology and biology
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[5]
Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials
N Zemzemi‚ MO Bernabeu‚ J Saiz‚ J Cooper‚ P Pathmanathan‚ GR Mirams‚ J Pitt−Francis and B Rodriguez
In British Journal of Pharmacology. Vol. 168. No. 3. Pages 718−733. 2013.
Details about Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | BibTeX data for Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | DOI (10.1111/j.1476-5381.2012.02200.x)
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[6]
Stochasticity in Action Potential duration Enhances Dispersion of Repolarisation at Fast Pacing Rates
John Walmsley‚ Kevin Burrage‚ Joe M. Pitt−Francis‚ Gary R. Mirams and Blanca Rodriguez
Vol. 102. No. 3. Pages 592a−593a. 2012.
Details about Stochasticity in Action Potential duration Enhances Dispersion of Repolarisation at Fast Pacing Rates | BibTeX data for Stochasticity in Action Potential duration Enhances Dispersion of Repolarisation at Fast Pacing Rates | DOI (10.1016/j.bpj.2011.11.3230)
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[7]
Simulating cardiac electrophysiology using anisotropic mesh adaptivity
J Pitt−Francis J Southern GJ Gorman MD Piggott PE Farrell MO Bernabeu
In Journal of computational science. No. 1. Pages 82−88. 2010.
Details about Simulating cardiac electrophysiology using anisotropic mesh adaptivity | BibTeX data for Simulating cardiac electrophysiology using anisotropic mesh adaptivity
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[8]
Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations
D. Kay M. Bernabeu P. Pathmanathan J. Pitt−Francis
In Transactions of Biomedical Engineering. Vol. 57. No. 12. Pages 2806−15. 2010.
Details about Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | BibTeX data for Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | DOI (10.1109/TBME.2010.2078817)
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[9]
A numerical guide to the solution of the bidomain equations of cardiac electrophysiology
D.J.a Pathmanathan P.a Bernabeu M.O.a Bordas R.a Cooper J.a Garny A.b Pitt−Francis J.M.a Whiteley J.P.a Gavaghan
In Progress in Biophysics and Molecular Biology. Vol. 102. No. 2−3. Pages 136−155. 2010.
cited By 33
Details about A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | BibTeX data for A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | DOI (10.1016/j.pbiomolbio.2010.05.006) | Link to A numerical guide to the solution of the bidomain equations of cardiac electrophysiology
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[10]
High−throughput cardiac science on the Grid
Details about High−throughput cardiac science on the Grid | BibTeX data for High−throughput cardiac science on the Grid
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[11]
Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library
M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley
In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009.
Details about Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | BibTeX data for Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | DOI (10.1098/rsta.2008.0309)
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[12]
Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models
Gavaghan D Bernabeu MO Corrias A Pitt−Francis J Rodriguez B Bethwaite B Enticott C Garic S Peachey T Tan J Abramson D
In Computers in Cardiology. 2009.
Details about Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models | BibTeX data for Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models
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[13]
Chaste: A test−driven approach to software development for biological modelling
D.J.a c Pitt−Francis J.a Pathmanathan P.a Bernabeu M.O.a Bordas R.a Cooper J.a Fletcher A.G.b c Mirams G.R.d Murray P.b Osborne J.M.a c Walter A.b Chapman S.J.b Garny A.d van Leeuwen I.M.M.e Maini P.K.b c Rodríguez B.a Waters S.L.b Whiteley J.P.a b Byrne H.M.f Gavaghan
In Computer Physics Communications. Vol. 180. No. 12. Pages 2452−2471. 2009.
cited By 102
Details about Chaste: A test−driven approach to software development for biological modelling | BibTeX data for Chaste: A test−driven approach to software development for biological modelling | DOI (10.1016/j.cpc.2009.07.019) | Link to Chaste: A test−driven approach to software development for biological modelling
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[14]
A computational study of discrete mechanical tissue models
P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman
In Physical Biology. Vol. 6. No. 3. 2009.
Details about A computational study of discrete mechanical tissue models | BibTeX data for A computational study of discrete mechanical tissue models | DOI (10.1088/1478-3975/6/3/036001)
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[15]
Simulation of cardiac electrophysiology on next−generation high−performance computers
J.c Bordas R.a Carpentieri B.b Fotia G.b Maggio F.b Nobes R.c Pitt−Francis J.a Southern
In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 367. No. 1895. Pages 1951−1969. 2009.
cited By 19
Details about Simulation of cardiac electrophysiology on next−generation high−performance computers | BibTeX data for Simulation of cardiac electrophysiology on next−generation high−performance computers | DOI (10.1098/rsta.2008.0298) | Link to Simulation of cardiac electrophysiology on next−generation high−performance computers
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[16]
An integrative computational model for intestinal tissue renewal
I.M.M. van Leeuwen‚ G.R. Mirams‚ A. Walter‚ A. Fletcher‚ P. Murray‚ J. Osborne‚ S. Varma‚ S.J. Young‚ J. Cooper‚ B. Doyle‚ J. Pitt−Francis‚ L. Momtahan‚ P. Pathmanathan‚ J.P. Whiteley‚ S.J. Chapman‚ D.J. Gavaghan‚ O.E. Jensen‚ J.R. King‚ P.K. Maini‚ S.L. Waters and H.M. Byrne
In Cell Proliferation. Vol. 42. Pages 617−636. 2009.
Details about An integrative computational model for intestinal tissue renewal | BibTeX data for An integrative computational model for intestinal tissue renewal | DOI (10.1111/j.1365-2184.2009.00627.x)
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[17]
High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution
Rodriguez B Bernabeu MO Bishop MJ Pitt−Francis J Gavaghan DJ Grau V
In Computers in Cardiology. 2008.
Details about High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution | BibTeX data for High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution
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[18]
Multi−scale computational modelling in biology and physiology.
James Southern‚ Joe Pitt−Francis‚ Jonathan Whiteley‚ Daniel Stokeley‚ Hiromichi Kobashi‚ Ross Nobes‚ Yoshimasa Kadooka and David Gavaghan
In Progress in Biophysics and Molecular Biology. Vol. 96. No. 1−3. Pages 60−89. 2008.
Details about Multi−scale computational modelling in biology and physiology. | BibTeX data for Multi−scale computational modelling in biology and physiology.
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[19]
Chaste: using agile programming techniques to develop computational biology software
J. Pitt−Francis‚ M.O. Bernabeu‚ J. Cooper‚ A. Garny‚ L. Momtahan‚ J. Osborne‚ P. Pathmanathan‚ B. Rodriguez‚ J.P. Whiteley and D.J. Gavaghan
In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 366. No. 1878. Pages 3111–3136. 2008.
Details about Chaste: using agile programming techniques to develop computational biology software | BibTeX data for Chaste: using agile programming techniques to develop computational biology software | DOI (10.1098/rsta.2008.0096)