Joe Pitt-Francis : Publications
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@article{pak2024mathematical,
title = "A mathematical framework for the emergence of winners and losers in cell competition",
author = "Pak, Thomas F and Pitt-Francis, Joe and Baker, Ruth E",
year = "2024",
journal = "Journal of Theoretical Biology",
pages = "111666",
publisher = "Academic Press",
volume = "577",
}
@article{ben2022structural,
title = "Structural Features of Microvascular Networks Trigger Blood Flow Oscillations",
author = "Ben-Ami, Yaron and Atkinson, George W and Pitt-Francis, Joe M and Maini, Philip K and Byrne, Helen M",
year = "2022",
journal = "Bulletin of Mathematical Biology",
number = "8",
pages = "85",
publisher = "Springer US New York",
volume = "84",
}
@article{kory2022dependence,
title = "Dependence of cell-free-layer width on rheological parameters: Combining empirical data on flow separation at microvascular bifurcations with geometrical considerations",
author = "K{\"o}ry, Jakub and Maini, Philip K and Pitt-Francis, Joe M and Byrne, Helen M",
year = "2022",
journal = "Physical Review E",
number = "1",
pages = "014414",
publisher = "American Physical Society",
volume = "105",
}
@article{celora2022dna,
title = "A DNA-structured mathematical model of cell-cycle progression in cyclic hypoxia",
author = "Celora, Giulia L and Bader, Samuel B and Hammond, Ester M and Maini, Philip K and Pitt-Francis, Joe M and Byrne, Helen M",
year = "2022",
journal = "Journal of Theoretical Biology",
pages = "111104",
publisher = "Academic Press",
volume = "545",
}
@article{cooper2020chaste,
title = "Chaste: cancer, heart and soft tissue environment",
author = "Cooper, Fergus R and Baker, Ruth E and Bernabeu, Miguel O and Bordas, Rafel and Bowler, Louise and Bueno-Orovio, Alfonso and Byrne, Helen M and Carapella, Valentina and Cardone-Noott, Louie and Jonatha, Cooper and others",
year = "2020",
journal = "Journal of Open Source Software",
number = "47",
publisher = "Europe PMC Funders",
volume = "5",
}
@article{pak2020pakman,
title = "Pakman: a modular, efficient and portable tool for approximate Bayesian inference",
author = "Pak, Thomas and Baker, Ruth and Pitt-Francis, Joe",
year = "2020",
journal = "Journal of Open Source Software",
number = "47",
publisher = "Open Journals",
volume = "5",
}
@article{bernabeu2020abnormal,
title = "Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation",
author = "Bernabeu, Miguel O and K{\"o}ry, Jakub and Grogan, James A and Markelc, Bostjan and Beardo, Albert and d�Avezac, Mayeul and Enjalbert, Romain and Kaeppler, Jakob and Daly, Nicholas and Hetherington, James and others",
year = "2020",
journal = "Proceedings of the National Academy of Sciences",
number = "45",
pages = "27811--27819",
publisher = "National Academy of Sciences",
volume = "117",
}
@article{frost2018cooperation,
title = "Cooperation, competition and antibiotic resistance in bacterial colonies",
author = "Frost, Isabel and Smith, William PJ and Mitri, Sara and Millan, Alvaro San and Davit, Yohan and Osborne, James M and Pitt-Francis, Joe M and MacLean, R Craig and Foster, Kevin R",
year = "2018",
journal = "The ISME journal",
number = "6",
pages = "1582--1593",
publisher = "Nature Publishing Group UK London",
volume = "12",
}
@article{grogan2018importance,
title = "The importance of geometry in the corneal micropocket angiogenesis assay",
author = "Grogan, James A and Connor, Anthony J and Pitt-Francis, Joe M and Maini, Philip K and Byrne, Helen M",
year = "2018",
journal = "PLoS computational biology",
number = "3",
pages = "e1006049",
publisher = "Public Library of Science",
volume = "14",
}
@article{collis2017bayesian,
title = "Bayesian calibration, validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial",
author = "Collis, Joe and Connor, Anthony J and Paczkowski, Marcin and Kannan, Pavitra and Pitt-Francis, Joe and Byrne, Helen M and Hubbard, Matthew E",
year = "2017",
journal = "Bulletin of mathematical biology",
pages = "939--974",
publisher = "Springer US",
volume = "79",
}
@article{grogan2017microvessel,
title = "Microvessel chaste: an open library for spatial modeling of vascularized tissues",
author = "Grogan, James A and Connor, Anthony J and Markelc, Bostjan and Muschel, Ruth J and Maini, Philip K and Byrne, Helen M and Pitt-Francis, Joe M",
year = "2017",
journal = "Biophysical Journal",
number = "9",
pages = "1767--1772",
publisher = "Elsevier",
volume = "112",
}
@article{smith2017cell,
title = "Cell morphology drives spatial patterning in microbial communities",
author = "Smith, William PJ and Davit, Yohan and Osborne, James M and Kim, Wook and Foster, Kevin R and Pitt-Francis, Joe M",
year = "2017",
journal = "Proceedings of the National Academy of Sciences",
number = "3",
pages = "E280--E286",
publisher = "National Academy of Sciences",
volume = "114",
}
@article{osborne2017comparing,
title = "Comparing individual-based approaches to modelling the self-organization of multicellular tissues",
author = "Osborne, James M and Fletcher, Alexander G and Pitt-Francis, Joe M and Maini, Philip K and Gavaghan, David J",
year = "2017",
journal = "PLoS computational biology",
number = "2",
pages = "e1005387",
publisher = "Public Library of Science",
volume = "13",
}
@article{grogan2016predicting,
title = "Predicting the influence of microvascular structure on tumor response to radiotherapy",
author = "Grogan, James A and Markelc, Bostjan and Connor, Anthony J and Muschel, Ruth J and Pitt-Francis, Joe M and Maini, Philip K and Byrne, Helen M",
year = "2016",
journal = "IEEE Transactions on Biomedical Engineering",
number = "3",
pages = "504--511",
publisher = "IEEE",
volume = "64",
}
@article{reddy2016veni,
title = "VENI, VIDI, Voronoi: Attacking Viruses with Spherical Voronoi Diagrams",
author = "Reddy, Tyler and Hemsley, Ross and Edmondson, Edd and Nowaczyk, Nikolai and Pitt-Francis, Joe and Sansom, Mark SP",
year = "2016",
journal = "Biophysical Journal",
number = "3",
pages = "36a",
publisher = "Elsevier",
volume = "110",
}
@article{bordas2015development,
title = "Development and analysis of patient-based complete conducting airways models",
author = "Bordas, Rafel and Lefevre, Christophe and Veeckmans, Bart and Pitt-Francis, Joe and Fetita, Catalin and Brightling, Christopher E and Kay, David and Siddiqui, Salman and Burrowes, Kelly S",
year = "2015",
journal = "PloS one",
number = "12",
pages = "e0144105",
publisher = "Public Library of Science San Francisco, CA USA",
volume = "10",
}
@article{rubinacci2015cognac,
title = "Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer",
author = "Rubinacci, Simone and Graudenzi, Alex and Caravagna, Giulio and Mauri, Giancarlo and Osborne, James and Pitt-Francis, Joe and Antoniotti, Marco",
year = "2015",
journal = "Cancer informatics",
pages = "CIN--S19965",
publisher = "SAGE Publications Sage UK: London, England",
volume = "14",
}
@article{connor2015integrated,
title = "An integrated approach to quantitative modelling in angiogenesis research",
author = "Connor, Anthony J and Nowak, Rados{\l}aw P and Lorenzon, Erica and Thomas, Markus and Herting, Frank and Hoert, Stefan and Quaiser, Tom and Shochat, Eliezer and Pitt-Francis, Joe and Cooper, Jonathan and others",
year = "2015",
journal = "Journal of The Royal Society Interface",
number = "110",
pages = "20150546",
publisher = "The Royal Society",
volume = "12",
}
@article{harvey2015parallel,
title = "A parallel implementation of an off-lattice individual-based model of multicellular populations",
author = "Harvey, Daniel G and Fletcher, Alexander G and Osborne, James M and Pitt-Francis, Joe",
year = "2015",
journal = "Computer Physics Communications",
pages = "130--137",
publisher = "North-Holland",
volume = "192",
}
@article{Walmsley2015,
title = "Application of stochastic phenomenological modelling to cell-to-cell and beat-to-beat electrophysiological variability in cardiac tissue",
author = "Walmsley, John and Mirams, Gary R and Pitt-Francis, Joe and Rodriguez, Blanca and Burrage, Kevin",
year = "2015",
journal = "Journal of theoretical biology",
pages = "325--336",
publisher = "Academic Press",
volume = "365",
doi = "10.1016/j.jtbi.2014.10.029",
}
@misc{knapp2015ten,
title = "Ten simple rules for a successful cross-disciplinary collaboration",
author = "Knapp, Bernhard and Bardenet, R{\'e}mi and Bernabeu, Miguel O and Bordas, Rafel and Bruna, Maria and Calderhead, Ben and Cooper, Jonathan and Fletcher, Alexander G and Groen, Derek and Kuijper, Bram and others",
year = "2015",
journal = "PLoS Computational Biology",
number = "4",
pages = "e1004214",
publisher = "Public Library of Science San Francisco, CA USA",
volume = "11",
}
@article{bernabeu2014ten,
title = "Ten simple rules for effective computational research",
author = "Bernabeu, Miguel and Bruna, Maria and Cooper, Jonathan and Dunn, Sara-Jane and Fletcher, Alexander and Gavaghan, David and McInerny, Greg and Mirams, Gary and Osborne, James and Pitt-Francis, Joe",
year = "2014",
journal = "PLoS Computational Biology",
number = "3",
publisher = "PLoS Computational Biology",
volume = "10",
}
@article{bordas2014clinical,
title = "Clinical validation of a CT-based impulse oscillometry model",
author = "Bordas, Rafel and Gonem, Sherif and Lefevre, Christophe and Veeckmans, Bart and Hartley, Ruth and Pitt-Francis, Joe and Fetita, Catalin and Brightling, Chris and Owers-Bradley, John and Kay, David and others",
year = "2014",
journal = "European Respiratory Journal",
number = "Suppl 58",
publisher = "European Respiratory Society",
volume = "44",
}
@article{bordas2014relationship,
title = "Relationship between heterogeneous bronchoconstriction and impulse oscillometry resistance: A simulation study",
author = "Bordas, Rafel and Gonem, Sherif and Vos, Wim and Hartley, Ruth and Pitt-Francis, Joe and De Backer, Jan and Brightling, Chris and Owers-Bradley, John and Kay, David and Siddiqui, Salman and others",
year = "2014",
journal = "European Respiratory Journal",
number = "Suppl 58",
publisher = "European Respiratory Society",
volume = "44",
}
@article{sadrieh2014multiscale,
title = "Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2",
author = "Sadrieh, Arash and Domanski, Luke and Pitt-Francis, Joe and Mann, Stefan A and Hodkinson, Emily C and Ng, Chai-Ann and Perry, Matthew D and Taylor, John A and Gavaghan, David and Subbiah, Rajesh N and others",
year = "2014",
journal = "Nature communications",
number = "1",
pages = "5069",
publisher = "Nature Publishing Group UK London",
volume = "5",
}
@article{bernabeu2014chaste,
title = "Chaste: a case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation",
author = "Bernabeu, Miguel O and Southern, James and Wilson, Nicholas and Strazdins, Peter and Cooper, Jonathan and Pitt-Francis, Joe",
year = "2014",
journal = "The International journal of high performance computing applications",
number = "1",
pages = "13--32",
publisher = "Sage Publications Sage UK: London, England",
volume = "28",
}
@article{Osborne2014TenSimple,
title = "Ten simple rules for effective computational research",
author = "Osborne, James M and Bernabeu, Miguel O and Bruna, Maria and Calderhead, Ben and Cooper, Jonathan and Dalchau, Neil and Dunn, Sara-Jane and Fletcher, Alexander G and Freeman, Robin and Groen, Derek and others",
year = "2014",
journal = "PLoS Computational Biology",
number = "3",
pages = "e1003506",
publisher = "Public Library of Science San Francisco, USA",
volume = "10",
doi = "10.1371/journal.pcbi.1003506",
}
@inproceedings{grogan2014simulating,
title = "Simulating tumour vasculature at multiple scales",
author = "Grogan, James A and Maini, Philip K and Pitt-Francis, Joe and Byrne, Helen M",
year = "2014",
booktitle = "Proceedings of the 2014 6th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation-The CHIC Project Workshop (IARWISOCI)",
organization = "IEEE",
pages = "1--4",
}
@article{davit2013hydrodynamic,
title = "Hydrodynamic dispersion within porous biofilms",
author = "Davit, Yohan and Byrne, Helen and Osborne, J and Pitt-Francis, Joe and Gavaghan, David and Quintard, Michel",
year = "2013",
journal = "Physical Review E",
number = "1",
pages = "012718",
publisher = "American Physical Society",
volume = "87",
}
@article{davit2013validity,
title = "Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues",
author = "Davit, Yohan and Osborne, James M and Byrne, HM and Gavaghan, David and Pitt-Francis, Joe",
year = "2013",
journal = "Physical Review E",
number = "4",
pages = "042724",
publisher = "American Physical Society",
volume = "87",
}
@article{zemzemi2013computational,
title = "Computational assessment of drug-induced effects on the electrocardiogram: from ion channel to body surface potentials",
author = "Zemzemi, Nejib and Bernabeu, Miguel O and Saiz, Javier and Cooper, Jonathan and Pathmanathan, Pras and Mirams, Gary R and Pitt-Francis, Joe and Rodriguez, Blanca",
year = "2013",
journal = "British journal of pharmacology",
number = "3",
pages = "718--733",
volume = "168",
}
@article{Bernabeu10022013,
title = "Chaste: a case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation",
author = "Bernabeu, Miguel O and Southern, James and Wilson, Nicholas and Strazdins, Peter and Cooper, Jonathan and Pitt-Francis, Joe",
year = "2013",
journal = "International Journal of High Performance Computing Applications",
doi = "10.1177/1094342012474997",
}
@article{MiramsChaste2013,
title = "Chaste: an open source C++ library for computational physiology and biology",
author = "Mirams, Gary R and Arthurs, Christopher J and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Corrias, Alberto and Davit, Yohan and Dunn, Sara-Jane and Fletcher, Alexander G and Harvey, Daniel G and others",
year = "2013",
journal = "PLoS computational biology",
number = "3",
pages = "e1002970",
publisher = "Public Library of Science San Francisco, USA",
volume = "9",
doi = "10.1371/journal.pcbi.1002970",
}
@article{Zemzemi2012,
title = "Computational assessment of drug-induced effects on the electrocardiogram: from ion channel block to body surface potentials",
author = "N Zemzemi and MO Bernabeu and J Saiz and J Cooper and P Pathmanathan and GR Mirams and J Pitt-Francis and B Rodriguez",
year = "2013",
journal = "British Journal of Pharmacology",
number = "3",
pages = "718-733",
volume = "168",
doi = "10.1111/j.1476-5381.2012.02200.x",
}
@article{walmsley2012stochasticity,
title = "Stochasticity in action potential duration enhances dispersion of repolarisation at fast pacing rates",
author = "Walmsley, John and Burrage, Kevin and Pitt-Francis, Joe M and Mirams, Gary R and Rodriguez, Blanca",
year = "2012",
journal = "Biophysical Journal",
number = "3",
pages = "592a--593a",
publisher = "Elsevier",
volume = "102",
}
@article{davit2012solute,
title = "Solute transport within porous biofilms: diffusion or dispersion?",
author = "Davit, Y and Byrne, H and Osborne, J and Pitt-Francis, J and Gavaghan, D and Quintard, M",
year = "2012",
}
@article{southern2010anisotropic,
title = "Anisotropic mesh adaptivity for cardiac electrophysiology",
author = "Southern, James and Gorman, Gerard J and Piggott, MD and Farrell, Patrick E and Bernabeu, Miguel O and Pitt-Francis, Joe",
year = "2010",
journal = "Procedia Computer Science",
number = "1",
pages = "935--944",
publisher = "Elsevier",
volume = "1",
}
@article{bernabeu2010stimulus,
title = "Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations",
author = "Bernabeu, Miguel O and Pathmanathan, Pras and Pitt-Francis, Joe and Kay, David",
year = "2010",
journal = "IEEE transactions on biomedical engineering",
number = "12",
pages = "2806--2815",
publisher = "IEEE",
volume = "57",
}
@article{southern2010simulating,
title = "Simulating cardiac electrophysiology using anisotropic mesh adaptivity",
author = "Southern, James and Gorman, Gerard J and Piggott, MD and Farrell, Patrick E and Bernabeu, Miguel O and Pitt-Francis, Joe",
year = "2010",
journal = "Journal of computational science",
number = "2",
pages = "82--88",
publisher = "Elsevier",
volume = "1",
}
@article{abramson2010high,
title = "High-throughput cardiac science on the Grid",
author = "Abramson, David and Bernabeu, Miguel O and Bethwaite, Blair and Burrage, Kevin and Corrias, Alberto and Enticott, Colin and Garic, Slavisa and Gavaghan, David and Peachey, Tom and Pitt-Francis, Joe and others",
year = "2010",
journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
number = "1925",
pages = "3907--3923",
publisher = "The Royal Society Publishing",
volume = "368",
}
@article{4020,
title = "Simulating cardiac electrophysiology using anisotropic mesh adaptivity",
author = "J Southern, GJ Gorman, MD Piggott, PE Farrell, MO Bernabeu, J Pitt-Francis",
year = "2010",
journal = "Journal of computational science",
number = "1",
pages = "82-88",
}
@article{3745,
title = "Stimulus protocol determines the most computationally-efficient preconditioner for the bidomain equations",
author = "M. Bernabeu, P. Pathmanathan, J. Pitt-Francis, D. Kay",
year = "2010",
journal = "Transactions of Biomedical Engineering",
number = "12",
pages = "2806-15",
volume = "57",
doi = "10.1109/TBME.2010.2078817",
}
@article{3940,
title = "A numerical guide to the solution of the bidomain equations of cardiac electrophysiology",
author = "Pathmanathan, Pras and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Garny, Alan and Pitt-Francis, Joe M and Whiteley, Jonathan P and Gavaghan, David J",
year = "2010",
journal = "Progress in biophysics and molecular biology",
number = "2-3",
pages = "136--155",
publisher = "Pergamon",
volume = "102",
doi = "10.1016/j.pbiomolbio.2010.05.006",
}
@proceedings{f20ea014d69194f,
title = "High-throughput cardiac science on the Grid",
author = "Abramson, D. and Bernabeu, MO and Bethwaite, B. and Burrage, K. and Corrias, A. and Enticott, C. and Garic, S. and Gavaghan, DJ and Peachey, T. and Pitt-Francis, J. and Pueyo, E. and Rodriguez, B. and Sher, A. and Tan, J.",
year = "2010",
keywords = "ca2+",
number = "1925",
pages = "3907--3923",
series = "PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES ",
volume = "368",
}
@article{Chaste2,
title = "Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library",
author = "Bernabeu, M.O. and Bordas, R. and Pathmanathan, P. and Pitt-Francis, J. and Cooper, J. and Garny, A. and Gavaghan, D.J. and Rodriguez, B. and Southern, J.A. and Whiteley, J.P.",
year = "2009",
journal = "Phil Trans Roy Soc (A)",
month = "May",
number = "1895",
pages = "1907-1930",
volume = "367",
doi = "10.1098/rsta.2008.0309",
}
@article{chapman2009integrative,
title = "An integrative computational model for intestinal tissue renewal",
author = "Chapman, Jon and Cooper, Jonathan and Fletcher, Alexander and Gavaghan, David and Maini, Philip and Mirams, Gary and Osborne, James and Pathmanathan, Pras and Pitt-Francis, Joe and Whiteley, Jonathan",
year = "2009",
journal = "Cell Proliferation",
publisher = "Cell Proliferation",
volume = "42",
}
@article{pathmanathan2009computational,
title = "A computational study of discrete mechanical tissue models",
author = "Pathmanathan, P and Cooper, Jonathan and Fletcher, Alexander and Mirams, Gary and Murray, P and Osborne, J and Pitt-Francis, Joe and Walter, Alex and Chapman, SJ",
year = "2009",
journal = "Physical biology",
number = "3",
pages = "036001",
publisher = "IOP Publishing",
volume = "6",
}
@article{4051,
title = "Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically-Based Models",
author = "Bernabeu MO, Corrias A, Pitt-Francis J, Rodriguez B, Bethwaite B, Enticott C, Garic S, Peachey T, Tan J, Abramson D, Gavaghan D",
year = "2009",
journal = "Computers in Cardiology",
}
@article{ChasteCPC09,
title = "Chaste: a test-driven approach to software development for biological modelling",
author = "Pitt-Francis, Joe and Pathmanathan, Pras and Bernabeu, Miguel O and Bordas, Rafel and Cooper, Jonathan and Fletcher, Alexander G and Mirams, Gary R and Murray, Philip and Osborne, James M and Walter, Alex and others",
year = "2009",
journal = "Computer Physics Communications",
number = "12",
pages = "2452--2471",
publisher = "North-Holland",
volume = "180",
doi = "10.1016/j.cpc.2009.07.019",
}
@article{chaste_dtm,
title = "A computational study of discrete mechanical tissue models",
author = "P Pathmanathan and J Cooper and A Fletcher and G Mirams and P Murray and J Osborne and J Pitt-Francis and A Walter and S J Chapman",
year = "2009",
journal = "Physical Biology",
number = "3",
volume = "6",
doi = "10.1088/1478-3975/6/3/036001",
}
@article{HPC,
title = "Simulation of cardiac electrophysiology on next-generation high-performance computers",
author = "Bordas, Rafel and Carpentieri, Bruno and Fotia, Giorgio and Maggio, Fabio and Nobes, Ross and Pitt-Francis, Joe and Southern, James",
year = "2009",
journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
number = "1895",
pages = "1951--1969",
publisher = "The Royal Society London",
volume = "367",
doi = "10.1098/rsta.2008.0298",
}
@article{cancerchaste1,
title = "An integrative computational model for intestinal tissue renewal",
author = "Van Leeuwen and Ingeborg MM and Mirams, GR and Walter, Alex and Fletcher, A and Murray, P and Osborne, J and Varma, S and Young, SJ and Cooper, J and Doyle, B and others",
year = "2009",
journal = "Cell proliferation",
number = "5",
pages = "617--636",
publisher = "Blackwell Publishing Ltd Oxford, UK",
volume = "42",
doi = "10.1111/j.1365-2184.2009.00627.x",
}
@inproceedings{bernabeu2009grid,
title = "Grid computing simulations of ion channel block effects on the ECG using 3D anatomically-based models",
author = "Bernabeu, MO and Corrias, A and Pitt-Francis, J and Rodriguez, B and Bethwaite, B and Enticott, C and Garic, S and Peachey, T and Tan, J and Abramson, D and others",
year = "2009",
booktitle = "2009 36th Annual Computers in Cardiology Conference (CinC)",
organization = "IEEE",
pages = "213--216",
}
@article{CompCardiol2008,
title = "High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para-cellular resolution",
author = "Bernabeu MO, Bishop MJ, Pitt-Francis J, Gavaghan DJ, Grau V, Rodriguez B",
year = "2008",
journal = "Computers in Cardiology",
}
@article{southern2008multi,
title = "Multi-scale computational modelling in biology and physiology",
author = "Southern, James and Pitt-Francis, Joe and Whiteley, Jonathan and Stokeley, Daniel and Kobashi, Hiromichi and Nobes, Ross and Kadooka, Yoshimasa and Gavaghan, David",
year = "2008",
journal = "Progress in biophysics and molecular biology",
number = "1-3",
pages = "60--89",
publisher = "Pergamon",
volume = "96",
}
@article{Chaste.08:Chaste,
title = "Chaste: using agile programming techniques to develop computational biology software",
author = "Pitt-Francis, Joe and Bernabeu, Miguel O and Cooper, Jonathan and Garny, Alan and Momtahan, Lee and Osborne, James and Pathmanathan, Pras and Rodriguez, Blanca and Whiteley, Jonathan P and Gavaghan, David J",
year = "2008",
journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
number = "1878",
pages = "3111--3136",
publisher = "The Royal Society London",
volume = "366",
doi = "10.1098/rsta.2008.0096",
}
@inproceedings{bernabeu2008high,
title = "High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para-cellular resolution",
author = "Bernabeu, MO and Bishop, MJ and Pitt-Francis, J and Gavaghan, DJ and Grau, V and Rodriguez, B",
year = "2008",
booktitle = "2008 Computers in Cardiology",
organization = "IEEE",
pages = "721--724",
}
@article{lloyd2007integrative,
title = "Integrative Biology�the challenges of developing a collaborative research environment for heart and cancer modelling",
author = "Lloyd, Sharon and Gavaghan, Dave and Simpson, Andrew and Mascord, Matthew and Seneurine, Clint and Williams, Geoff and Pitt-Francis, Joe and Boyd, David and Mac Randal, Damian and Sastry, Lakshmi and others",
year = "2007",
journal = "Future Generation Computer Systems",
number = "3",
pages = "457--465",
publisher = "North-Holland",
volume = "23",
}
@article{pitt2006multimodal,
title = "Multimodal imaging techniques for the extraction of detailed geometrical and physiological information for use in multi-scale models of colorectal cancer and treatment of individual patients",
author = "Pitt-Francis, Joe and Chen, Dan and Slaymaker, Mark and Simpson, Andrew and Brady, Michael and Van Leeuwen, Ingeborg and Reddington, Fiona and Quirke, Phil and Brown, Gina and Gavaghan, David",
year = "2006",
journal = "Computational and Mathematical Methods in Medicine",
number = "2-3",
pages = "177--188",
publisher = "Taylor \& Francis Group",
volume = "7",
}
@article{pitt2006enabling,
title = "Enabling computer models of the heart for high-performance computers and the grid",
author = "Pitt-Francis, Joe and Garny, Alan and Gavaghan, David",
year = "2006",
journal = "Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences",
number = "1843",
pages = "1501--1516",
publisher = "The Royal Society London",
volume = "364",
}
@article{drobnjak2006development,
title = "Development of a functional magnetic resonance imaging simulator for modeling realistic rigid-body motion artifacts",
author = "Drobnjak, Ivana and Gavaghan, David and S{\"u}li, Endre and Pitt-Francis, Joe and Jenkinson, Mark",
year = "2006",
journal = "Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine",
number = "2",
pages = "364--380",
publisher = "Wiley Subscription Services, Inc., A Wiley Company Hoboken",
volume = "56",
}
@inproceedings{gavaghan2004gathering,
title = "Gathering requirements for an Integrative Biology project",
author = "Gavaghan, David and Whiteley, Jonathan and Pitt-Francis, Joe and Slaymaker, Mark and Boyd, David and Mac Randal, Damian and van Dam, Kerstin Kleese and Sastry, Lakshmi",
year = "2004",
booktitle = "Proc. UK e-Science All Hands Meeting",
pages = "99--105",
}
@inproceedings{cameron2002directions,
title = "Directions in the use and computation of proximity queries",
author = "Cameron, Stephen and Fenton-May, Tristam and Pitt-Francis, Joe",
year = "2002",
booktitle = "Geometric Modeling and Processing. Theory and Applications. GMP 2002. Proceedings",
organization = "IEEE",
pages = "43--52",
}
@article{cameron2001using,
title = "Using oxsim for path planning",
author = "Cameron, Stephen and Pitt-Francis, Joe",
year = "2001",
journal = "Journal of Robotic Systems",
number = "8",
pages = "421--431",
publisher = "John Wiley \& Sons, Inc. New York",
volume = "18",
}
@article{cameron2000geometric,
title = "Geometric Modelling and Robotics",
author = "Cameron, Stephen and Pitt-Francis, Joe",
year = "2000",
journal = "International Journal of Shape Modeling",
number = "02",
pages = "145--164",
publisher = "World Scientific Publishing Company",
volume = "6",
}
@inproceedings{cameron1998motion,
title = "Motion planning for real problems",
author = "Cameron, S and Pitt-Francis, J",
year = "1998",
booktitle = "Advanced robotics: beyond 2000 (Birmingham, 27 April-1 May 1998)",
}
@inproceedings{pitt1998automatic,
title = "Automatic generation of sphere hierarchies from cad data",
author = "Pitt-Francis, Joe and Feathertone, R",
year = "1998",
booktitle = "Proceedings. 1998 IEEE International Conference on Robotics and Automation (Cat. No. 98CH36146)",
organization = "IEEE",
pages = "324--329",
volume = "1",
}
@article{groganimportance,
title = "The importance of geometry in the corneal micropocket assay",
author = "Grogan, James A and Connor, Anthony J and Pitt-Francis, Joe M and Maini, Philip K and Byrne, Helen M",
}
@article{quaizerintegrated,
title = "An integrated approach to quantitative modelling in angiogenesis research",
author = "Quaizer, Tom and Shochat, Eliezer and Pitt-Francis, Joe and Cooper, Jonathan and Maini, Philip K and Byrne, Helen M",
}
@article{pittcomparison,
title = "Comparison of parallel solution techniques for the Eikonal equation",
author = "Pitt-Francis, Joe and Anderson, James",
}