Joe Pitt-Francis : Publications

Journal papers

• [1]

  A mathematical framework for the emergence of winners and losers in cell competition

  Thomas F Pak‚ Joe Pitt−Francis and Ruth E Baker

  In Journal of Theoretical Biology. Vol. 577. Pages 111666. 2024.

  Details about A mathematical framework for the emergence of winners and losers in cell competition | BibTeX data for A mathematical framework for the emergence of winners and losers in cell competition

• [2]

  Structural Features of Microvascular Networks Trigger Blood Flow Oscillations

  Yaron Ben−Ami‚ George W Atkinson‚ Joe M Pitt−Francis‚ Philip K Maini and Helen M Byrne

  In Bulletin of Mathematical Biology. Vol. 84. No. 8. Pages 85. 2022.

  Details about Structural Features of Microvascular Networks Trigger Blood Flow Oscillations | BibTeX data for Structural Features of Microvascular Networks Trigger Blood Flow Oscillations

• [3]

  Dependence of cell−free−layer width on rheological parameters: Combining empirical data on flow separation at microvascular bifurcations with geometrical considerations

  Jakub Köry‚ Philip K Maini‚ Joe M Pitt−Francis and Helen M Byrne

  In Physical Review E. Vol. 105. No. 1. Pages 014414. 2022.

  Details about Dependence of cell−free−layer width on rheological parameters: Combining empirical data on flow separation at microvascular bifurcations with geometrical considerations | BibTeX data for Dependence of cell−free−layer width on rheological parameters: Combining empirical data on flow separation at microvascular bifurcations with geometrical considerations

• [4]

  A DNA−structured mathematical model of cell−cycle progression in cyclic hypoxia

  Giulia L Celora‚ Samuel B Bader‚ Ester M Hammond‚ Philip K Maini‚ Joe M Pitt−Francis and Helen M Byrne

  In Journal of Theoretical Biology. Vol. 545. Pages 111104. 2022.

  Details about A DNA−structured mathematical model of cell−cycle progression in cyclic hypoxia | BibTeX data for A DNA−structured mathematical model of cell−cycle progression in cyclic hypoxia

• [5]

  Chaste: cancer‚ heart and soft tissue environment

  Fergus R Cooper‚ Ruth E Baker‚ Miguel O Bernabeu‚ Rafel Bordas‚ Louise Bowler‚ Alfonso Bueno−Orovio‚ Helen M Byrne‚ Valentina Carapella‚ Louie Cardone−Noott‚ Cooper Jonatha and others

  In Journal of Open Source Software. Vol. 5. No. 47. 2020.

  Details about Chaste: cancer‚ heart and soft tissue environment | BibTeX data for Chaste: cancer‚ heart and soft tissue environment

• [6]

  Pakman: a modular‚ efficient and portable tool for approximate Bayesian inference

  Thomas Pak‚ Ruth Baker and Joe Pitt−Francis

  In Journal of Open Source Software. Vol. 5. No. 47. 2020.

  Details about Pakman: a modular‚ efficient and portable tool for approximate Bayesian inference | BibTeX data for Pakman: a modular‚ efficient and portable tool for approximate Bayesian inference

• [7]

  Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation

  Miguel O Bernabeu‚ Jakub Köry‚ James A Grogan‚ Bostjan Markelc‚ Albert Beardo‚ Mayeul d�Avezac‚ Romain Enjalbert‚ Jakob Kaeppler‚ Nicholas Daly‚ James Hetherington and others

  In Proceedings of the National Academy of Sciences. Vol. 117. No. 45. Pages 27811–27819. 2020.

  Details about Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation | BibTeX data for Abnormal morphology biases hematocrit distribution in tumor vasculature and contributes to heterogeneity in tissue oxygenation

• [8]

  Cooperation‚ competition and antibiotic resistance in bacterial colonies

  Isabel Frost‚ William PJ Smith‚ Sara Mitri‚ Alvaro San Millan‚ Yohan Davit‚ James M Osborne‚ Joe M Pitt−Francis‚ R Craig MacLean and Kevin R Foster

  In The ISME journal. Vol. 12. No. 6. Pages 1582–1593. 2018.

  Details about Cooperation‚ competition and antibiotic resistance in bacterial colonies | BibTeX data for Cooperation‚ competition and antibiotic resistance in bacterial colonies

• [9]

  The importance of geometry in the corneal micropocket angiogenesis assay

  James A Grogan‚ Anthony J Connor‚ Joe M Pitt−Francis‚ Philip K Maini and Helen M Byrne

  In PLoS computational biology. Vol. 14. No. 3. Pages e1006049. 2018.

  Details about The importance of geometry in the corneal micropocket angiogenesis assay | BibTeX data for The importance of geometry in the corneal micropocket angiogenesis assay

• [10]

  Bayesian calibration‚ validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial

  Joe Collis‚ Anthony J Connor‚ Marcin Paczkowski‚ Pavitra Kannan‚ Joe Pitt−Francis‚ Helen M Byrne and Matthew E Hubbard

  In Bulletin of mathematical biology. Vol. 79. Pages 939–974. 2017.

  Details about Bayesian calibration‚ validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial | BibTeX data for Bayesian calibration‚ validation and uncertainty quantification for predictive modelling of tumour growth: a tutorial

• [11]

  Microvessel chaste: an open library for spatial modeling of vascularized tissues

  James A Grogan‚ Anthony J Connor‚ Bostjan Markelc‚ Ruth J Muschel‚ Philip K Maini‚ Helen M Byrne and Joe M Pitt−Francis

  In Biophysical Journal. Vol. 112. No. 9. Pages 1767–1772. 2017.

  Details about Microvessel chaste: an open library for spatial modeling of vascularized tissues | BibTeX data for Microvessel chaste: an open library for spatial modeling of vascularized tissues

• [12]

  Cell morphology drives spatial patterning in microbial communities

  William PJ Smith‚ Yohan Davit‚ James M Osborne‚ Wook Kim‚ Kevin R Foster and Joe M Pitt−Francis

  In Proceedings of the National Academy of Sciences. Vol. 114. No. 3. Pages E280–E286. 2017.

  Details about Cell morphology drives spatial patterning in microbial communities | BibTeX data for Cell morphology drives spatial patterning in microbial communities

• [13]

  Comparing individual−based approaches to modelling the self−organization of multicellular tissues

  James M Osborne‚ Alexander G Fletcher‚ Joe M Pitt−Francis‚ Philip K Maini and David J Gavaghan

  In PLoS computational biology. Vol. 13. No. 2. Pages e1005387. 2017.

  Details about Comparing individual−based approaches to modelling the self−organization of multicellular tissues | BibTeX data for Comparing individual−based approaches to modelling the self−organization of multicellular tissues

• [14]

  Predicting the influence of microvascular structure on tumor response to radiotherapy

  James A Grogan‚ Bostjan Markelc‚ Anthony J Connor‚ Ruth J Muschel‚ Joe M Pitt−Francis‚ Philip K Maini and Helen M Byrne

  In IEEE Transactions on Biomedical Engineering. Vol. 64. No. 3. Pages 504–511. 2016.

  Details about Predicting the influence of microvascular structure on tumor response to radiotherapy | BibTeX data for Predicting the influence of microvascular structure on tumor response to radiotherapy

• [15]

  VENI‚ VIDI‚ Voronoi: Attacking Viruses with Spherical Voronoi Diagrams

  Tyler Reddy‚ Ross Hemsley‚ Edd Edmondson‚ Nikolai Nowaczyk‚ Joe Pitt−Francis and Mark SP Sansom

  In Biophysical Journal. Vol. 110. No. 3. Pages 36a. 2016.

  Details about VENI‚ VIDI‚ Voronoi: Attacking Viruses with Spherical Voronoi Diagrams | BibTeX data for VENI‚ VIDI‚ Voronoi: Attacking Viruses with Spherical Voronoi Diagrams

• [16]

  Development and analysis of patient−based complete conducting airways models

  Rafel Bordas‚ Christophe Lefevre‚ Bart Veeckmans‚ Joe Pitt−Francis‚ Catalin Fetita‚ Christopher E Brightling‚ David Kay‚ Salman Siddiqui and Kelly S Burrowes

  In PloS one. Vol. 10. No. 12. Pages e0144105. 2015.

  Details about Development and analysis of patient−based complete conducting airways models | BibTeX data for Development and analysis of patient−based complete conducting airways models

• [17]

  Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer

  Simone Rubinacci‚ Alex Graudenzi‚ Giulio Caravagna‚ Giancarlo Mauri‚ James Osborne‚ Joe Pitt−Francis and Marco Antoniotti

  In Cancer informatics. Vol. 14. Pages CIN–S19965. 2015.

  Details about Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer | BibTeX data for Cognac: a chaste plugin for the multiscale simulation of gene regulatory networks driving the spatial dynamics of tissues and cancer

• [18]

  An integrated approach to quantitative modelling in angiogenesis research

  Anthony J Connor‚ Radosław P Nowak‚ Erica Lorenzon‚ Markus Thomas‚ Frank Herting‚ Stefan Hoert‚ Tom Quaiser‚ Eliezer Shochat‚ Joe Pitt−Francis‚ Jonathan Cooper and others

  In Journal of The Royal Society Interface. Vol. 12. No. 110. Pages 20150546. 2015.

  Details about An integrated approach to quantitative modelling in angiogenesis research | BibTeX data for An integrated approach to quantitative modelling in angiogenesis research

• [19]

  A parallel implementation of an off−lattice individual−based model of multicellular populations

  Daniel G Harvey‚ Alexander G Fletcher‚ James M Osborne and Joe Pitt−Francis

  In Computer Physics Communications. Vol. 192. Pages 130–137. 2015.

  Details about A parallel implementation of an off−lattice individual−based model of multicellular populations | BibTeX data for A parallel implementation of an off−lattice individual−based model of multicellular populations

• [20]

  Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue

  John Walmsley‚ Gary R Mirams‚ Joe Pitt−Francis‚ Blanca Rodriguez and Kevin Burrage

  In Journal of theoretical biology. Vol. 365. Pages 325–336. 2015.

  Details about Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue | BibTeX data for Application of stochastic phenomenological modelling to cell−to−cell and beat−to−beat electrophysiological variability in cardiac tissue | DOI (10.1016/j.jtbi.2014.10.029)

• [21]

  Ten simple rules for effective computational research

  Miguel Bernabeu‚ Maria Bruna‚ Jonathan Cooper‚ Sara−Jane Dunn‚ Alexander Fletcher‚ David Gavaghan‚ Greg McInerny‚ Gary Mirams‚ James Osborne and Joe Pitt−Francis

  In PLoS Computational Biology. Vol. 10. No. 3. 2014.

  Details about Ten simple rules for effective computational research | BibTeX data for Ten simple rules for effective computational research

• [22]

  Clinical validation of a CT−based impulse oscillometry model

  Rafel Bordas‚ Sherif Gonem‚ Christophe Lefevre‚ Bart Veeckmans‚ Ruth Hartley‚ Joe Pitt−Francis‚ Catalin Fetita‚ Chris Brightling‚ John Owers−Bradley‚ David Kay and others

  In European Respiratory Journal. Vol. 44. No. Suppl 58. 2014.

  Details about Clinical validation of a CT−based impulse oscillometry model | BibTeX data for Clinical validation of a CT−based impulse oscillometry model

• [23]

  Relationship between heterogeneous bronchoconstriction and impulse oscillometry resistance: A simulation study

  Rafel Bordas‚ Sherif Gonem‚ Wim Vos‚ Ruth Hartley‚ Joe Pitt−Francis‚ Jan De Backer‚ Chris Brightling‚ John Owers−Bradley‚ David Kay‚ Salman Siddiqui and others

  In European Respiratory Journal. Vol. 44. No. Suppl 58. 2014.

  Details about Relationship between heterogeneous bronchoconstriction and impulse oscillometry resistance: A simulation study | BibTeX data for Relationship between heterogeneous bronchoconstriction and impulse oscillometry resistance: A simulation study

• [24]

  Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2

  Arash Sadrieh‚ Luke Domanski‚ Joe Pitt−Francis‚ Stefan A Mann‚ Emily C Hodkinson‚ Chai−Ann Ng‚ Matthew D Perry‚ John A Taylor‚ David Gavaghan‚ Rajesh N Subbiah and others

  In Nature communications. Vol. 5. No. 1. Pages 5069. 2014.

  Details about Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2 | BibTeX data for Multiscale cardiac modelling reveals the origins of notched T waves in long QT syndrome type 2

• [25]

  Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation

  Miguel O Bernabeu‚ James Southern‚ Nicholas Wilson‚ Peter Strazdins‚ Jonathan Cooper and Joe Pitt−Francis

  In The International journal of high performance computing applications. Vol. 28. No. 1. Pages 13–32. 2014.

  Details about Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | BibTeX data for Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation

• [26]

  Ten simple rules for effective computational research

  James M Osborne‚ Miguel O Bernabeu‚ Maria Bruna‚ Ben Calderhead‚ Jonathan Cooper‚ Neil Dalchau‚ Sara−Jane Dunn‚ Alexander G Fletcher‚ Robin Freeman‚ Derek Groen and others

  In PLoS Computational Biology. Vol. 10. No. 3. Pages e1003506. 2014.

  Details about Ten simple rules for effective computational research | BibTeX data for Ten simple rules for effective computational research | DOI (10.1371/journal.pcbi.1003506)

• [27]

  Hydrodynamic dispersion within porous biofilms

  Yohan Davit‚ Helen Byrne‚ J Osborne‚ Joe Pitt−Francis‚ David Gavaghan and Michel Quintard

  In Physical Review E. Vol. 87. No. 1. Pages 012718. 2013.

  Details about Hydrodynamic dispersion within porous biofilms | BibTeX data for Hydrodynamic dispersion within porous biofilms

• [28]

  Validity of the Cauchy−Born rule applied to discrete cellular−scale models of biological tissues

  Yohan Davit‚ James M Osborne‚ HM Byrne‚ David Gavaghan and Joe Pitt−Francis

  In Physical Review E. Vol. 87. No. 4. Pages 042724. 2013.

  Details about Validity of the Cauchy−Born rule applied to discrete cellular−scale models of biological tissues | BibTeX data for Validity of the Cauchy−Born rule applied to discrete cellular−scale models of biological tissues

• [29]

  Computational assessment of drug−induced effects on the electrocardiogram: from ion channel to body surface potentials

  Nejib Zemzemi‚ Miguel O Bernabeu‚ Javier Saiz‚ Jonathan Cooper‚ Pras Pathmanathan‚ Gary R Mirams‚ Joe Pitt−Francis and Blanca Rodriguez

  In British journal of pharmacology. Vol. 168. No. 3. Pages 718–733. 2013.

  Details about Computational assessment of drug−induced effects on the electrocardiogram: from ion channel to body surface potentials | BibTeX data for Computational assessment of drug−induced effects on the electrocardiogram: from ion channel to body surface potentials

• [30]

  Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation

  Miguel O Bernabeu‚ James Southern‚ Nicholas Wilson‚ Peter Strazdins‚ Jonathan Cooper and Joe Pitt−Francis

  In International Journal of High Performance Computing Applications. 2013.

  Details about Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | BibTeX data for Chaste: a case study of parallelisation of an open source finite−element solver with applications to computational cardiac electrophysiology simulation | DOI (10.1177/1094342012474997)

• [31]

  Chaste: an open source C++ library for computational physiology and biology

  Gary R Mirams‚ Christopher J Arthurs‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alberto Corrias‚ Yohan Davit‚ Sara−Jane Dunn‚ Alexander G Fletcher‚ Daniel G Harvey and others

  In PLoS computational biology. Vol. 9. No. 3. Pages e1002970. 2013.

  Details about Chaste: an open source C++ library for computational physiology and biology | BibTeX data for Chaste: an open source C++ library for computational physiology and biology | DOI (10.1371/journal.pcbi.1002970)

• [32]

  Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials

  N Zemzemi‚ MO Bernabeu‚ J Saiz‚ J Cooper‚ P Pathmanathan‚ GR Mirams‚ J Pitt−Francis and B Rodriguez

  In British Journal of Pharmacology. Vol. 168. No. 3. Pages 718−733. 2013.

  Details about Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | BibTeX data for Computational assessment of drug−induced effects on the electrocardiogram: from ion channel block to body surface potentials | DOI (10.1111/j.1476-5381.2012.02200.x)

• [33]

  Stochasticity in action potential duration enhances dispersion of repolarisation at fast pacing rates

  John Walmsley‚ Kevin Burrage‚ Joe M Pitt−Francis‚ Gary R Mirams and Blanca Rodriguez

  In Biophysical Journal. Vol. 102. No. 3. Pages 592a–593a. 2012.

  Details about Stochasticity in action potential duration enhances dispersion of repolarisation at fast pacing rates | BibTeX data for Stochasticity in action potential duration enhances dispersion of repolarisation at fast pacing rates

• [34]

  Solute transport within porous biofilms: diffusion or dispersion?

  Y Davit‚ H Byrne‚ J Osborne‚ J Pitt−Francis‚ D Gavaghan and M Quintard

  2012.

  Details about Solute transport within porous biofilms: diffusion or dispersion? | BibTeX data for Solute transport within porous biofilms: diffusion or dispersion?

• [35]

  Anisotropic mesh adaptivity for cardiac electrophysiology

  James Southern‚ Gerard J Gorman‚ MD Piggott‚ Patrick E Farrell‚ Miguel O Bernabeu and Joe Pitt−Francis

  In Procedia Computer Science. Vol. 1. No. 1. Pages 935–944. 2010.

  Details about Anisotropic mesh adaptivity for cardiac electrophysiology | BibTeX data for Anisotropic mesh adaptivity for cardiac electrophysiology

• [36]

  Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations

  Miguel O Bernabeu‚ Pras Pathmanathan‚ Joe Pitt−Francis and David Kay

  In IEEE transactions on biomedical engineering. Vol. 57. No. 12. Pages 2806–2815. 2010.

  Details about Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations | BibTeX data for Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations

• [37]

  Simulating cardiac electrophysiology using anisotropic mesh adaptivity

  James Southern‚ Gerard J Gorman‚ MD Piggott‚ Patrick E Farrell‚ Miguel O Bernabeu and Joe Pitt−Francis

  In Journal of computational science. Vol. 1. No. 2. Pages 82–88. 2010.

  Details about Simulating cardiac electrophysiology using anisotropic mesh adaptivity | BibTeX data for Simulating cardiac electrophysiology using anisotropic mesh adaptivity

• [38]

  High−throughput cardiac science on the Grid

  David Abramson‚ Miguel O Bernabeu‚ Blair Bethwaite‚ Kevin Burrage‚ Alberto Corrias‚ Colin Enticott‚ Slavisa Garic‚ David Gavaghan‚ Tom Peachey‚ Joe Pitt−Francis and others

  In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 368. No. 1925. Pages 3907–3923. 2010.

  Details about High−throughput cardiac science on the Grid | BibTeX data for High−throughput cardiac science on the Grid

• [39]

  Simulating cardiac electrophysiology using anisotropic mesh adaptivity

  J Pitt−Francis J Southern GJ Gorman MD Piggott PE Farrell MO Bernabeu

  In Journal of computational science. No. 1. Pages 82−88. 2010.

  Details about Simulating cardiac electrophysiology using anisotropic mesh adaptivity | BibTeX data for Simulating cardiac electrophysiology using anisotropic mesh adaptivity

• [40]

  Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations

  D. Kay M. Bernabeu P. Pathmanathan J. Pitt−Francis

  In Transactions of Biomedical Engineering. Vol. 57. No. 12. Pages 2806−15. 2010.

  Details about Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | BibTeX data for Stimulus protocol determines the most computationally−efficient preconditioner for the bidomain equations | DOI (10.1109/TBME.2010.2078817)

• [41]

  A numerical guide to the solution of the bidomain equations of cardiac electrophysiology

  Pras Pathmanathan‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alan Garny‚ Joe M Pitt−Francis‚ Jonathan P Whiteley and David J Gavaghan

  In Progress in biophysics and molecular biology. Vol. 102. No. 2−3. Pages 136–155. 2010.

  Details about A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | BibTeX data for A numerical guide to the solution of the bidomain equations of cardiac electrophysiology | DOI (10.1016/j.pbiomolbio.2010.05.006)

• [42]

  An integrative computational model for intestinal tissue renewal

  Jon Chapman‚ Jonathan Cooper‚ Alexander Fletcher‚ David Gavaghan‚ Philip Maini‚ Gary Mirams‚ James Osborne‚ Pras Pathmanathan‚ Joe Pitt−Francis and Jonathan Whiteley

  In Cell Proliferation. Vol. 42. 2009.

  Details about An integrative computational model for intestinal tissue renewal | BibTeX data for An integrative computational model for intestinal tissue renewal

• [43]

  A computational study of discrete mechanical tissue models

  P Pathmanathan‚ Jonathan Cooper‚ Alexander Fletcher‚ Gary Mirams‚ P Murray‚ J Osborne‚ Joe Pitt−Francis‚ Alex Walter and SJ Chapman

  In Physical biology. Vol. 6. No. 3. Pages 036001. 2009.

  Details about A computational study of discrete mechanical tissue models | BibTeX data for A computational study of discrete mechanical tissue models

• [44]

  Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models

  Gavaghan D Bernabeu MO Corrias A Pitt−Francis J Rodriguez B Bethwaite B Enticott C Garic S Peachey T Tan J Abramson D

  In Computers in Cardiology. 2009.

  Details about Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models | BibTeX data for Grid Computing Simulations of Ion Channel Block Effects on the ECG Using 3D Anatomically−Based Models

• [45]

  Chaste: a test−driven approach to software development for biological modelling

  Joe Pitt−Francis‚ Pras Pathmanathan‚ Miguel O Bernabeu‚ Rafel Bordas‚ Jonathan Cooper‚ Alexander G Fletcher‚ Gary R Mirams‚ Philip Murray‚ James M Osborne‚ Alex Walter and others

  In Computer Physics Communications. Vol. 180. No. 12. Pages 2452–2471. 2009.

  Details about Chaste: a test−driven approach to software development for biological modelling | BibTeX data for Chaste: a test−driven approach to software development for biological modelling | DOI (10.1016/j.cpc.2009.07.019)

• [46]

  A computational study of discrete mechanical tissue models

  P Pathmanathan‚ J Cooper‚ A Fletcher‚ G Mirams‚ P Murray‚ J Osborne‚ J Pitt−Francis‚ A Walter and S J Chapman

  In Physical Biology. Vol. 6. No. 3. 2009.

  Details about A computational study of discrete mechanical tissue models | BibTeX data for A computational study of discrete mechanical tissue models | DOI (10.1088/1478-3975/6/3/036001)

• [47]

  Simulation of cardiac electrophysiology on next−generation high−performance computers

  Rafel Bordas‚ Bruno Carpentieri‚ Giorgio Fotia‚ Fabio Maggio‚ Ross Nobes‚ Joe Pitt−Francis and James Southern

  In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 367. No. 1895. Pages 1951–1969. 2009.

  Details about Simulation of cardiac electrophysiology on next−generation high−performance computers | BibTeX data for Simulation of cardiac electrophysiology on next−generation high−performance computers | DOI (10.1098/rsta.2008.0298)

• [48]

  An integrative computational model for intestinal tissue renewal

  Van Leeuwen‚ Ingeborg MM‚ GR Mirams‚ Alex Walter‚ A Fletcher‚ P Murray‚ J Osborne‚ S Varma‚ SJ Young‚ J Cooper‚ B Doyle and others

  In Cell proliferation. Vol. 42. No. 5. Pages 617–636. 2009.

  Details about An integrative computational model for intestinal tissue renewal | BibTeX data for An integrative computational model for intestinal tissue renewal | DOI (10.1111/j.1365-2184.2009.00627.x)

• [49]

  Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library

  M.O. Bernabeu‚ R. Bordas‚ P. Pathmanathan‚ J. Pitt−Francis‚ J. Cooper‚ A. Garny‚ D.J. Gavaghan‚ B. Rodriguez‚ J.A. Southern and J.P. Whiteley

  In Phil Trans Roy Soc (A). Vol. 367. No. 1895. Pages 1907−1930. May, 2009.

  Details about Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | BibTeX data for Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library | DOI (10.1098/rsta.2008.0309)

• [50]

  High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

  Rodriguez B Bernabeu MO Bishop MJ Pitt−Francis J Gavaghan DJ Grau V

  In Computers in Cardiology. 2008.

  Details about High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution | BibTeX data for High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

• [51]

  Multi−scale computational modelling in biology and physiology

  James Southern‚ Joe Pitt−Francis‚ Jonathan Whiteley‚ Daniel Stokeley‚ Hiromichi Kobashi‚ Ross Nobes‚ Yoshimasa Kadooka and David Gavaghan

  In Progress in biophysics and molecular biology. Vol. 96. No. 1−3. Pages 60–89. 2008.

  Details about Multi−scale computational modelling in biology and physiology | BibTeX data for Multi−scale computational modelling in biology and physiology

• [52]

  Chaste: using agile programming techniques to develop computational biology software

  Joe Pitt−Francis‚ Miguel O Bernabeu‚ Jonathan Cooper‚ Alan Garny‚ Lee Momtahan‚ James Osborne‚ Pras Pathmanathan‚ Blanca Rodriguez‚ Jonathan P Whiteley and David J Gavaghan

  In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 366. No. 1878. Pages 3111–3136. 2008.

  Details about Chaste: using agile programming techniques to develop computational biology software | BibTeX data for Chaste: using agile programming techniques to develop computational biology software | DOI (10.1098/rsta.2008.0096)

• [53]

  Integrative Biology�the challenges of developing a collaborative research environment for heart and cancer modelling

  Sharon Lloyd‚ Dave Gavaghan‚ Andrew Simpson‚ Matthew Mascord‚ Clint Seneurine‚ Geoff Williams‚ Joe Pitt−Francis‚ David Boyd‚ Damian Mac Randal‚ Lakshmi Sastry and others

  In Future Generation Computer Systems. Vol. 23. No. 3. Pages 457–465. 2007.

  Details about Integrative Biology�the challenges of developing a collaborative research environment for heart and cancer modelling | BibTeX data for Integrative Biology�the challenges of developing a collaborative research environment for heart and cancer modelling

• [54]

  Multimodal imaging techniques for the extraction of detailed geometrical and physiological information for use in multi−scale models of colorectal cancer and treatment of individual patients

  Joe Pitt−Francis‚ Dan Chen‚ Mark Slaymaker‚ Andrew Simpson‚ Michael Brady‚ Ingeborg Van Leeuwen‚ Fiona Reddington‚ Phil Quirke‚ Gina Brown and David Gavaghan

  In Computational and Mathematical Methods in Medicine. Vol. 7. No. 2−3. Pages 177–188. 2006.

  Details about Multimodal imaging techniques for the extraction of detailed geometrical and physiological information for use in multi−scale models of colorectal cancer and treatment of individual patients | BibTeX data for Multimodal imaging techniques for the extraction of detailed geometrical and physiological information for use in multi−scale models of colorectal cancer and treatment of individual patients

• [55]

  Enabling computer models of the heart for high−performance computers and the grid

  Joe Pitt−Francis‚ Alan Garny and David Gavaghan

  In Philosophical Transactions of the Royal Society A: Mathematical‚ Physical and Engineering Sciences. Vol. 364. No. 1843. Pages 1501–1516. 2006.

  Details about Enabling computer models of the heart for high−performance computers and the grid | BibTeX data for Enabling computer models of the heart for high−performance computers and the grid

• [56]

  Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts

  Ivana Drobnjak‚ David Gavaghan‚ Endre Süli‚ Joe Pitt−Francis and Mark Jenkinson

  In Magnetic Resonance in Medicine: An Official Journal of the International Society for Magnetic Resonance in Medicine. Vol. 56. No. 2. Pages 364–380. 2006.

  Details about Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts | BibTeX data for Development of a functional magnetic resonance imaging simulator for modeling realistic rigid−body motion artifacts

• [57]

  Using oxsim for path planning

  Stephen Cameron and Joe Pitt−Francis

  In Journal of Robotic Systems. Vol. 18. No. 8. Pages 421–431. 2001.

  Details about Using oxsim for path planning | BibTeX data for Using oxsim for path planning

• [58]

  Geometric Modelling and Robotics

  Stephen Cameron and Joe Pitt−Francis

  In International Journal of Shape Modeling. Vol. 6. No. 02. Pages 145–164. 2000.

  Details about Geometric Modelling and Robotics | BibTeX data for Geometric Modelling and Robotics

• [59]

  The importance of geometry in the corneal micropocket assay

  James A Grogan‚ Anthony J Connor‚ Joe M Pitt−Francis‚ Philip K Maini and Helen M Byrne

  Details about The importance of geometry in the corneal micropocket assay | BibTeX data for The importance of geometry in the corneal micropocket assay

• [60]

  An integrated approach to quantitative modelling in angiogenesis research

  Tom Quaizer‚ Eliezer Shochat‚ Joe Pitt−Francis‚ Jonathan Cooper‚ Philip K Maini and Helen M Byrne

  Details about An integrated approach to quantitative modelling in angiogenesis research | BibTeX data for An integrated approach to quantitative modelling in angiogenesis research

• [61]

  Comparison of parallel solution techniques for the Eikonal equation

  Joe Pitt−Francis and James Anderson

  Details about Comparison of parallel solution techniques for the Eikonal equation | BibTeX data for Comparison of parallel solution techniques for the Eikonal equation

Conference papers

• [1]

  Simulating tumour vasculature at multiple scales

  James A Grogan‚ Philip K Maini‚ Joe Pitt−Francis and Helen M Byrne

  In Proceedings of the 2014 6th International Advanced Research Workshop on In Silico Oncology and Cancer Investigation−The CHIC Project Workshop (IARWISOCI). Pages 1–4. IEEE. 2014.

  Details about Simulating tumour vasculature at multiple scales | BibTeX data for Simulating tumour vasculature at multiple scales

• [2]

  Grid computing simulations of ion channel block effects on the ECG using 3D anatomically−based models

  MO Bernabeu‚ A Corrias‚ J Pitt−Francis‚ B Rodriguez‚ B Bethwaite‚ C Enticott‚ S Garic‚ T Peachey‚ J Tan‚ D Abramson and others

  In 2009 36th Annual Computers in Cardiology Conference (CinC). Pages 213–216. IEEE. 2009.

  Details about Grid computing simulations of ion channel block effects on the ECG using 3D anatomically−based models | BibTeX data for Grid computing simulations of ion channel block effects on the ECG using 3D anatomically−based models

• [3]

  High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

  MO Bernabeu‚ MJ Bishop‚ J Pitt−Francis‚ DJ Gavaghan‚ V Grau and B Rodriguez

  In 2008 Computers in Cardiology. Pages 721–724. IEEE. 2008.

  Details about High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution | BibTeX data for High performance computer simulations for the study of biological function in 3D heart models incorporating fibre orientation and realistic geometry at para−cellular resolution

• [4]

  Gathering requirements for an Integrative Biology project

  David Gavaghan‚ Jonathan Whiteley‚ Joe Pitt−Francis‚ Mark Slaymaker‚ David Boyd‚ Damian Mac Randal‚ Kerstin Kleese van Dam and Lakshmi Sastry

  In Proc. UK e−Science All Hands Meeting. Pages 99–105. 2004.

  Details about Gathering requirements for an Integrative Biology project | BibTeX data for Gathering requirements for an Integrative Biology project

• [5]

  Directions in the use and computation of proximity queries

  Stephen Cameron‚ Tristam Fenton−May and Joe Pitt−Francis

  In Geometric Modeling and Processing. Theory and Applications. GMP 2002. Proceedings. Pages 43–52. IEEE. 2002.

  Details about Directions in the use and computation of proximity queries | BibTeX data for Directions in the use and computation of proximity queries

• [6]

  Motion planning for real problems

  S Cameron and J Pitt−Francis

  In Advanced robotics: beyond 2000 (Birmingham‚ 27 April−1 May 1998). 1998.

  Details about Motion planning for real problems | BibTeX data for Motion planning for real problems

• [7]

  Automatic generation of sphere hierarchies from cad data

  Joe Pitt−Francis and R Feathertone

  In Proceedings. 1998 IEEE International Conference on Robotics and Automation (Cat. No. 98CH36146). Vol. 1. Pages 324–329. IEEE. 1998.

  Details about Automatic generation of sphere hierarchies from cad data | BibTeX data for Automatic generation of sphere hierarchies from cad data

Miscellaneous

• [1]

  Ten simple rules for a successful cross−disciplinary collaboration

  Bernhard Knapp‚ Rémi Bardenet‚ Miguel O Bernabeu‚ Rafel Bordas‚ Maria Bruna‚ Ben Calderhead‚ Jonathan Cooper‚ Alexander G Fletcher‚ Derek Groen‚ Bram Kuijper and others

  2015.

  Details about Ten simple rules for a successful cross−disciplinary collaboration | BibTeX data for Ten simple rules for a successful cross−disciplinary collaboration